Hb_000899_060

Information

Type -
Description -
Location Contig899: 142231-143449
Sequence    

Annotation

kegg
ID pxb:103935796
description putative late blight resistance protein homolog R1B-19
nr
ID XP_012477950.1
description PREDICTED: uncharacterized protein LOC105793631 [Gossypium raimondii]
swissprot
ID Q6L440
description Putative late blight resistance protein homolog R1A-3 OS=Solanum demissum GN=R1A-3 PE=5 SV=2
trembl
ID A0A0D2RZ29
description Gossypium raimondii chromosome 4, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_004G138000 PE=4 SV=1
Gene Ontology
ID GO:0046872
description late blight resistance protein homolog r1b-19

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000899_060 0.0 - - PREDICTED: uncharacterized protein LOC105793631 [Gossypium raimondii]
2 Hb_037684_010 0.074345479 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105645015 [Jatropha curcas]
3 Hb_002477_080 0.0890523787 - - hypothetical protein RCOM_0653450 [Ricinus communis]
4 Hb_002374_520 0.0954632119 - - early nodulin 8 precursor family protein [Populus trichocarpa]
5 Hb_002598_020 0.1053641856 - - PREDICTED: sugar transporter ERD6-like 5 [Populus euphratica]
6 Hb_000090_020 0.1163183218 - - acyltransferase, putative [Ricinus communis]
7 Hb_103541_010 0.1237032731 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X2 [Jatropha curcas]
8 Hb_000477_010 0.1311713782 - - PREDICTED: potassium channel AKT1-like [Jatropha curcas]
9 Hb_020817_030 0.1351089851 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
10 Hb_000245_100 0.1375054166 - - PREDICTED: uncharacterized protein LOC105631555 [Jatropha curcas]
11 Hb_007802_010 0.1382827031 - - Receptor like protein 6, putative [Theobroma cacao]
12 Hb_000816_050 0.1388256006 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
13 Hb_000325_010 0.1391462889 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
14 Hb_000537_090 0.1411573157 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001318_230 0.1425498494 - - Boron transporter, putative [Ricinus communis]
16 Hb_008092_020 0.1471287997 - - transcription factor, putative [Ricinus communis]
17 Hb_126466_010 0.1487760827 - - alcohol dehydrogenase, putative [Ricinus communis]
18 Hb_000994_100 0.1489130538 - - RALFL33, putative [Ricinus communis]
19 Hb_003835_030 0.1492283905 - - glycosyltransferase, partial [Arabidopsis thaliana]
20 Hb_001143_140 0.1505485527 - - Aldehyde dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000899_060 Hb_000899_060 Hb_037684_010 Hb_037684_010 Hb_000899_060--Hb_037684_010 Hb_002477_080 Hb_002477_080 Hb_000899_060--Hb_002477_080 Hb_002374_520 Hb_002374_520 Hb_000899_060--Hb_002374_520 Hb_002598_020 Hb_002598_020 Hb_000899_060--Hb_002598_020 Hb_000090_020 Hb_000090_020 Hb_000899_060--Hb_000090_020 Hb_103541_010 Hb_103541_010 Hb_000899_060--Hb_103541_010 Hb_037684_010--Hb_002374_520 Hb_020817_030 Hb_020817_030 Hb_037684_010--Hb_020817_030 Hb_000245_100 Hb_000245_100 Hb_037684_010--Hb_000245_100 Hb_002053_170 Hb_002053_170 Hb_037684_010--Hb_002053_170 Hb_037684_010--Hb_002598_020 Hb_001823_070 Hb_001823_070 Hb_002477_080--Hb_001823_070 Hb_002431_090 Hb_002431_090 Hb_002477_080--Hb_002431_090 Hb_000816_050 Hb_000816_050 Hb_002477_080--Hb_000816_050 Hb_002477_080--Hb_103541_010 Hb_000028_460 Hb_000028_460 Hb_002477_080--Hb_000028_460 Hb_002374_520--Hb_002598_020 Hb_032260_130 Hb_032260_130 Hb_002374_520--Hb_032260_130 Hb_007237_080 Hb_007237_080 Hb_002374_520--Hb_007237_080 Hb_000453_290 Hb_000453_290 Hb_002374_520--Hb_000453_290 Hb_000537_090 Hb_000537_090 Hb_002598_020--Hb_000537_090 Hb_026144_040 Hb_026144_040 Hb_002598_020--Hb_026144_040 Hb_000162_070 Hb_000162_070 Hb_002598_020--Hb_000162_070 Hb_002598_020--Hb_000090_020 Hb_008598_010 Hb_008598_010 Hb_002598_020--Hb_008598_010 Hb_001318_230 Hb_001318_230 Hb_002598_020--Hb_001318_230 Hb_000090_020--Hb_103541_010 Hb_012553_030 Hb_012553_030 Hb_000090_020--Hb_012553_030 Hb_000090_020--Hb_000537_090 Hb_000732_100 Hb_000732_100 Hb_000090_020--Hb_000732_100 Hb_000090_020--Hb_001318_230 Hb_103541_010--Hb_012553_030 Hb_050898_010 Hb_050898_010 Hb_103541_010--Hb_050898_010 Hb_183209_020 Hb_183209_020 Hb_103541_010--Hb_183209_020 Hb_103541_010--Hb_000537_090 Hb_103541_010--Hb_002598_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.2931 0.142239 1.78738 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.696477 0.848837

CAGE analysis