Hb_000900_030

Information

Type -
Description -
Location Contig900: 48701-56695
Sequence    

Annotation

kegg
ID rcu:RCOM_1353350
description WD-repeat protein, putative (EC:2.7.11.7)
nr
ID XP_012082480.1
description PREDICTED: WD repeat-containing protein 3 [Jatropha curcas]
swissprot
ID Q9UNX4
description WD repeat-containing protein 3 OS=Homo sapiens GN=WDR3 PE=1 SV=1
trembl
ID A0A067JZ02
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16585 PE=4 SV=1
Gene Ontology
ID GO:0005730
description wd repeat-containing protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61945: 48924-54139 , PASA_asmbl_61947: 55105-56643
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000900_030 0.0 - - PREDICTED: WD repeat-containing protein 3 [Jatropha curcas]
2 Hb_001062_010 0.0494022671 - - PREDICTED: CWF19-like protein 2 [Jatropha curcas]
3 Hb_009175_020 0.0646454162 - - PREDICTED: uncharacterized protein LOC101303140 [Fragaria vesca subsp. vesca]
4 Hb_009486_180 0.0665837118 - - unknown [Glycine max]
5 Hb_000441_120 0.0748202168 - - PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_004267_040 0.0763490193 - - PREDICTED: transcriptional adapter ADA2a [Jatropha curcas]
7 Hb_000011_230 0.0782829834 - - PREDICTED: bifunctional protein FolD 4, chloroplastic-like [Jatropha curcas]
8 Hb_000347_070 0.0810740033 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002311_290 0.0815065144 - - PREDICTED: pumilio homolog 24 [Jatropha curcas]
10 Hb_017862_020 0.0818981507 - - PREDICTED: probable inactive serine/threonine-protein kinase lvsG [Jatropha curcas]
11 Hb_000731_270 0.0823329618 - - PREDICTED: polyadenylate-binding protein RBP45B isoform X1 [Jatropha curcas]
12 Hb_006420_040 0.0824049315 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 4 isoform X2 [Jatropha curcas]
13 Hb_003847_130 0.0832213624 - - cytochrome C oxidase assembly protein cox11, putative [Ricinus communis]
14 Hb_002631_170 0.0833842883 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 36 [Jatropha curcas]
15 Hb_002092_130 0.0837316425 - - PREDICTED: protein CASP-like [Oryza brachyantha]
16 Hb_000473_110 0.0840628808 - - PREDICTED: PP2A regulatory subunit TAP46 [Jatropha curcas]
17 Hb_104061_020 0.0842347252 - - PREDICTED: UV-stimulated scaffold protein A homolog [Jatropha curcas]
18 Hb_001343_040 0.0848413303 - - PREDICTED: uncharacterized protein LOC105638555 [Jatropha curcas]
19 Hb_000207_180 0.08493062 - - PREDICTED: calponin homology domain-containing protein DDB_G0272472 [Jatropha curcas]
20 Hb_123903_010 0.0849931962 transcription factor TF Family: IWS1 conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000900_030 Hb_000900_030 Hb_001062_010 Hb_001062_010 Hb_000900_030--Hb_001062_010 Hb_009175_020 Hb_009175_020 Hb_000900_030--Hb_009175_020 Hb_009486_180 Hb_009486_180 Hb_000900_030--Hb_009486_180 Hb_000441_120 Hb_000441_120 Hb_000900_030--Hb_000441_120 Hb_004267_040 Hb_004267_040 Hb_000900_030--Hb_004267_040 Hb_000011_230 Hb_000011_230 Hb_000900_030--Hb_000011_230 Hb_009976_020 Hb_009976_020 Hb_001062_010--Hb_009976_020 Hb_001343_040 Hb_001343_040 Hb_001062_010--Hb_001343_040 Hb_002311_290 Hb_002311_290 Hb_001062_010--Hb_002311_290 Hb_002815_030 Hb_002815_030 Hb_001062_010--Hb_002815_030 Hb_001062_010--Hb_009175_020 Hb_009175_020--Hb_009486_180 Hb_002329_040 Hb_002329_040 Hb_009175_020--Hb_002329_040 Hb_000190_120 Hb_000190_120 Hb_009175_020--Hb_000190_120 Hb_000429_220 Hb_000429_220 Hb_009175_020--Hb_000429_220 Hb_123903_010 Hb_123903_010 Hb_009175_020--Hb_123903_010 Hb_002107_070 Hb_002107_070 Hb_009175_020--Hb_002107_070 Hb_001178_070 Hb_001178_070 Hb_009486_180--Hb_001178_070 Hb_009486_180--Hb_000011_230 Hb_009486_180--Hb_002311_290 Hb_009486_180--Hb_001062_010 Hb_006420_040 Hb_006420_040 Hb_000441_120--Hb_006420_040 Hb_000165_040 Hb_000165_040 Hb_000441_120--Hb_000165_040 Hb_003206_130 Hb_003206_130 Hb_000441_120--Hb_003206_130 Hb_000207_180 Hb_000207_180 Hb_000441_120--Hb_000207_180 Hb_000395_130 Hb_000395_130 Hb_000441_120--Hb_000395_130 Hb_009270_020 Hb_009270_020 Hb_000441_120--Hb_009270_020 Hb_000011_100 Hb_000011_100 Hb_004267_040--Hb_000011_100 Hb_000120_280 Hb_000120_280 Hb_004267_040--Hb_000120_280 Hb_000563_130 Hb_000563_130 Hb_004267_040--Hb_000563_130 Hb_005588_090 Hb_005588_090 Hb_004267_040--Hb_005588_090 Hb_000398_080 Hb_000398_080 Hb_004267_040--Hb_000398_080 Hb_000603_030 Hb_000603_030 Hb_004267_040--Hb_000603_030 Hb_000011_230--Hb_000190_120 Hb_004954_070 Hb_004954_070 Hb_000011_230--Hb_004954_070 Hb_000011_230--Hb_009175_020 Hb_004412_010 Hb_004412_010 Hb_000011_230--Hb_004412_010 Hb_000084_120 Hb_000084_120 Hb_000011_230--Hb_000084_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.4239 6.07674 4.16754 4.79832 10.0682 6.61419
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.22229 5.50253 4.70159 9.89678 6.48785

CAGE analysis