Hb_000903_060

Information

Type -
Description -
Location Contig903: 194433-197413
Sequence    

Annotation

kegg
ID rcu:RCOM_1518710
description protein with unknown function (EC:3.1.4.12)
nr
ID XP_012066252.1
description PREDICTED: ras-related protein RABA5e [Jatropha curcas]
swissprot
ID Q9SIP0
description Ras-related protein RABA5d OS=Arabidopsis thaliana GN=RABA5D PE=1 SV=1
trembl
ID A0A067L385
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23819 PE=3 SV=1
Gene Ontology
ID GO:0005622
description ras-related protein raba5e

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61973: 194558-197493
cDNA
(Sanger)
(ID:Location)		 026_B03.ab1: 195149-197459 , 034_D05.ab1: 194911-197493

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000903_060 0.0 - - PREDICTED: ras-related protein RABA5e [Jatropha curcas]
2 Hb_004734_040 0.0849255967 - - eukaryotic translation initiation factor 5A isoform I [Hevea brasiliensis]
3 Hb_023732_030 0.0861678918 - - PREDICTED: proteinaceous RNase P 2-like isoform X2 [Jatropha curcas]
4 Hb_073973_100 0.0932194195 - - PREDICTED: uncharacterized protein LOC105638910 [Jatropha curcas]
5 Hb_001018_050 0.0967785788 - - PREDICTED: aspartate aminotransferase, cytoplasmic [Jatropha curcas]
6 Hb_002197_050 0.0980465153 - - hypothetical protein CICLE_v10002157mg [Citrus clementina]
7 Hb_000556_120 0.0991580868 - - Spastin, putative [Ricinus communis]
8 Hb_006570_080 0.1021465177 - - PREDICTED: BRCA1-A complex subunit BRE isoform X1 [Jatropha curcas]
9 Hb_000907_110 0.1025371599 - - dihydroxyacetone kinase family protein [Populus trichocarpa]
10 Hb_000460_030 0.103294167 - - 4-hydroxybenzoate octaprenyltransferase, putative [Ricinus communis]
11 Hb_000312_080 0.1042165342 - - PREDICTED: transmembrane protein 97-like [Jatropha curcas]
12 Hb_000015_040 0.1067226211 - - PREDICTED: uncharacterized protein LOC105647937 isoform X2 [Jatropha curcas]
13 Hb_003376_330 0.106838583 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]
14 Hb_002471_290 0.1082322087 - - PREDICTED: vacuolar fusion protein CCZ1 homolog isoform X1 [Jatropha curcas]
15 Hb_165928_030 0.1085996881 - - conserved hypothetical protein [Ricinus communis]
16 Hb_006637_070 0.1089892772 - - PREDICTED: pentatricopeptide repeat-containing protein At2g37230 [Jatropha curcas]
17 Hb_011716_070 0.1100256138 transcription factor TF Family: HRT PREDICTED: uncharacterized protein LOC105637858 isoform X1 [Jatropha curcas]
18 Hb_000948_160 0.1102940124 - - PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic [Jatropha curcas]
19 Hb_008725_230 0.1104426692 - - PREDICTED: CTP synthase [Jatropha curcas]
20 Hb_029584_050 0.1105653599 - - PREDICTED: inorganic pyrophosphatase 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000903_060 Hb_000903_060 Hb_004734_040 Hb_004734_040 Hb_000903_060--Hb_004734_040 Hb_023732_030 Hb_023732_030 Hb_000903_060--Hb_023732_030 Hb_073973_100 Hb_073973_100 Hb_000903_060--Hb_073973_100 Hb_001018_050 Hb_001018_050 Hb_000903_060--Hb_001018_050 Hb_002197_050 Hb_002197_050 Hb_000903_060--Hb_002197_050 Hb_000556_120 Hb_000556_120 Hb_000903_060--Hb_000556_120 Hb_005391_040 Hb_005391_040 Hb_004734_040--Hb_005391_040 Hb_001653_020 Hb_001653_020 Hb_004734_040--Hb_001653_020 Hb_007894_060 Hb_007894_060 Hb_004734_040--Hb_007894_060 Hb_001301_110 Hb_001301_110 Hb_004734_040--Hb_001301_110 Hb_000665_050 Hb_000665_050 Hb_004734_040--Hb_000665_050 Hb_003376_330 Hb_003376_330 Hb_023732_030--Hb_003376_330 Hb_023732_030--Hb_073973_100 Hb_023732_030--Hb_000556_120 Hb_000907_110 Hb_000907_110 Hb_023732_030--Hb_000907_110 Hb_000431_170 Hb_000431_170 Hb_023732_030--Hb_000431_170 Hb_023732_030--Hb_002197_050 Hb_073973_100--Hb_003376_330 Hb_000270_490 Hb_000270_490 Hb_073973_100--Hb_000270_490 Hb_073973_100--Hb_000556_120 Hb_002000_080 Hb_002000_080 Hb_073973_100--Hb_002000_080 Hb_165928_030 Hb_165928_030 Hb_073973_100--Hb_165928_030 Hb_000152_660 Hb_000152_660 Hb_001018_050--Hb_000152_660 Hb_001252_120 Hb_001252_120 Hb_001018_050--Hb_001252_120 Hb_001157_090 Hb_001157_090 Hb_001018_050--Hb_001157_090 Hb_001018_050--Hb_073973_100 Hb_010142_030 Hb_010142_030 Hb_001018_050--Hb_010142_030 Hb_000137_090 Hb_000137_090 Hb_002197_050--Hb_000137_090 Hb_000948_160 Hb_000948_160 Hb_002197_050--Hb_000948_160 Hb_002197_050--Hb_000431_170 Hb_000003_320 Hb_000003_320 Hb_002197_050--Hb_000003_320 Hb_000312_080 Hb_000312_080 Hb_002197_050--Hb_000312_080 Hb_031340_050 Hb_031340_050 Hb_002197_050--Hb_031340_050 Hb_005634_010 Hb_005634_010 Hb_000556_120--Hb_005634_010 Hb_000329_060 Hb_000329_060 Hb_000556_120--Hb_000329_060 Hb_000140_290 Hb_000140_290 Hb_000556_120--Hb_000140_290 Hb_001876_050 Hb_001876_050 Hb_000556_120--Hb_001876_050 Hb_004324_130 Hb_004324_130 Hb_000556_120--Hb_004324_130 Hb_000556_120--Hb_001252_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.9479 32.6273 31.5104 38.8826 33.2716 25.2934
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
61.6907 47.9733 29.3803 71.7831 19.796

CAGE analysis