Hb_000904_070

Information

Type -
Description -
Location Contig904: 102194-103261
Sequence    

Annotation

kegg
ID rcu:RCOM_0813570
description Acetylglutamate kinase, putative (EC:2.7.2.8)
nr
ID XP_012066875.1
description PREDICTED: acetylglutamate kinase, chloroplastic [Jatropha curcas]
swissprot
ID Q9SCL7
description Acetylglutamate kinase, chloroplastic OS=Arabidopsis thaliana GN=NAGK PE=1 SV=1
trembl
ID A0A067L504
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01607 PE=3 SV=1
Gene Ontology
ID GO:0005737
description acetylglutamate chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61977: 102087-103426
cDNA
(Sanger)
(ID:Location)		 025_B07.ab1: 102087-102925 , 034_H16.ab1: 102087-102925 , 039_L12.ab1: 102087-102782

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000904_070 0.0 - - PREDICTED: acetylglutamate kinase, chloroplastic [Jatropha curcas]
2 Hb_000056_210 0.0875435022 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26900, mitochondrial [Jatropha curcas]
3 Hb_000788_100 0.0878442622 - - PREDICTED: pentatricopeptide repeat-containing protein At3g62890-like [Jatropha curcas]
4 Hb_002701_020 0.0909681847 - - PREDICTED: transcription factor BIM2 [Jatropha curcas]
5 Hb_005694_110 0.092826482 - - hypothetical protein PRUPE_ppa008137mg [Prunus persica]
6 Hb_000465_460 0.0985185437 - - PREDICTED: U3 small nucleolar RNA-associated protein 25 [Jatropha curcas]
7 Hb_003952_090 0.1037653532 - - PREDICTED: threonine dehydratase biosynthetic, chloroplastic [Jatropha curcas]
8 Hb_003010_030 0.1061901024 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
9 Hb_001226_160 0.1063743313 - - PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform X1 [Jatropha curcas]
10 Hb_000563_320 0.1067144821 - - PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]
11 Hb_001242_060 0.1068540049 - - PREDICTED: uncharacterized protein LOC105139508 [Populus euphratica]
12 Hb_003992_240 0.107229144 - - -
13 Hb_001157_040 0.1072732057 - - casein kinase, putative [Ricinus communis]
14 Hb_000696_150 0.1084885062 - - PREDICTED: pentatricopeptide repeat-containing protein At3g51320 [Jatropha curcas]
15 Hb_003929_250 0.1085004705 - - PREDICTED: proteasome assembly chaperone 4 [Jatropha curcas]
16 Hb_000093_160 0.1092626681 - - PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1 [Jatropha curcas]
17 Hb_005725_250 0.1097793714 - - PREDICTED: uncharacterized protein LOC105630805 isoform X1 [Jatropha curcas]
18 Hb_001776_140 0.1098734021 - - PREDICTED: probable GTP-binding protein OBGM, mitochondrial isoform X2 [Jatropha curcas]
19 Hb_000920_180 0.110205185 - - PREDICTED: F-box protein SKIP5 [Jatropha curcas]
20 Hb_002813_040 0.1107882898 - - PREDICTED: PRA1 family protein G2 [Jatropha curcas]

Gene co-expression network

sample Hb_000904_070 Hb_000904_070 Hb_000056_210 Hb_000056_210 Hb_000904_070--Hb_000056_210 Hb_000788_100 Hb_000788_100 Hb_000904_070--Hb_000788_100 Hb_002701_020 Hb_002701_020 Hb_000904_070--Hb_002701_020 Hb_005694_110 Hb_005694_110 Hb_000904_070--Hb_005694_110 Hb_000465_460 Hb_000465_460 Hb_000904_070--Hb_000465_460 Hb_003952_090 Hb_003952_090 Hb_000904_070--Hb_003952_090 Hb_000696_150 Hb_000696_150 Hb_000056_210--Hb_000696_150 Hb_001195_600 Hb_001195_600 Hb_000056_210--Hb_001195_600 Hb_000342_060 Hb_000342_060 Hb_000056_210--Hb_000342_060 Hb_000866_220 Hb_000866_220 Hb_000056_210--Hb_000866_220 Hb_004374_070 Hb_004374_070 Hb_000056_210--Hb_004374_070 Hb_011316_050 Hb_011316_050 Hb_000788_100--Hb_011316_050 Hb_012762_050 Hb_012762_050 Hb_000788_100--Hb_012762_050 Hb_005332_070 Hb_005332_070 Hb_000788_100--Hb_005332_070 Hb_135545_010 Hb_135545_010 Hb_000788_100--Hb_135545_010 Hb_003992_240 Hb_003992_240 Hb_000788_100--Hb_003992_240 Hb_002835_080 Hb_002835_080 Hb_002701_020--Hb_002835_080 Hb_000227_080 Hb_000227_080 Hb_002701_020--Hb_000227_080 Hb_003929_250 Hb_003929_250 Hb_002701_020--Hb_003929_250 Hb_000428_050 Hb_000428_050 Hb_002701_020--Hb_000428_050 Hb_009265_070 Hb_009265_070 Hb_002701_020--Hb_009265_070 Hb_000056_200 Hb_000056_200 Hb_002701_020--Hb_000056_200 Hb_000034_100 Hb_000034_100 Hb_005694_110--Hb_000034_100 Hb_005276_210 Hb_005276_210 Hb_005694_110--Hb_005276_210 Hb_003010_030 Hb_003010_030 Hb_005694_110--Hb_003010_030 Hb_000096_070 Hb_000096_070 Hb_005694_110--Hb_000096_070 Hb_000300_060 Hb_000300_060 Hb_005694_110--Hb_000300_060 Hb_000462_140 Hb_000462_140 Hb_005694_110--Hb_000462_140 Hb_058999_020 Hb_058999_020 Hb_000465_460--Hb_058999_020 Hb_000317_240 Hb_000317_240 Hb_000465_460--Hb_000317_240 Hb_004931_070 Hb_004931_070 Hb_000465_460--Hb_004931_070 Hb_001242_060 Hb_001242_060 Hb_000465_460--Hb_001242_060 Hb_001758_100 Hb_001758_100 Hb_000465_460--Hb_001758_100 Hb_001157_040 Hb_001157_040 Hb_000465_460--Hb_001157_040 Hb_002477_280 Hb_002477_280 Hb_003952_090--Hb_002477_280 Hb_001481_090 Hb_001481_090 Hb_003952_090--Hb_001481_090 Hb_001369_220 Hb_001369_220 Hb_003952_090--Hb_001369_220 Hb_001766_110 Hb_001766_110 Hb_003952_090--Hb_001766_110 Hb_002759_150 Hb_002759_150 Hb_003952_090--Hb_002759_150 Hb_018838_030 Hb_018838_030 Hb_003952_090--Hb_018838_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
75.8965 99.1315 41.5916 49.3027 92.0024 115.69
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
76.0592 178.296 82.9961 37.6551 66.6798

CAGE analysis