Hb_000905_070

Information

Type -
Description -
Location Contig905: 76702-82420
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa016565mg
description hypothetical protein
nr
ID XP_009772753.1
description PREDICTED: uncharacterized protein LOC104223093 [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID M5WK07
description Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016565mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000905_070 0.0 - - PREDICTED: uncharacterized protein LOC104223093 [Nicotiana sylvestris]
2 Hb_171108_010 0.1783632307 - - -
3 Hb_002493_030 0.2097807468 - - -
4 Hb_005892_070 0.213172167 - - Ribosomal L11 methyltransferase [Gossypium arboreum]
5 Hb_000100_050 0.2382495605 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
6 Hb_011978_010 0.2382703279 - - hypothetical protein JCGZ_03852 [Jatropha curcas]
7 Hb_000375_380 0.2382812045 - - -
8 Hb_004324_380 0.2384126412 - - -
9 Hb_007008_020 0.2388231248 - - -
10 Hb_027393_020 0.2392274101 - - -
11 Hb_046727_010 0.2411129581 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
12 Hb_080765_020 0.2416150185 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
13 Hb_158990_010 0.2424133263 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
14 Hb_000098_280 0.2443182908 - - PREDICTED: pentatricopeptide repeat-containing protein At1g33350 [Jatropha curcas]
15 Hb_000953_150 0.2458387129 - - -
16 Hb_002163_060 0.2580967829 - - -
17 Hb_000362_240 0.2621975666 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000922_310 0.2623005591 transcription factor TF Family: MYB PREDICTED: transcription factor MYB98-like [Jatropha curcas]
19 Hb_002124_020 0.2625521381 transcription factor TF Family: bHLH lMYC3 [Hevea brasiliensis]
20 Hb_002805_320 0.2629301138 - - -

Gene co-expression network

sample Hb_000905_070 Hb_000905_070 Hb_171108_010 Hb_171108_010 Hb_000905_070--Hb_171108_010 Hb_002493_030 Hb_002493_030 Hb_000905_070--Hb_002493_030 Hb_005892_070 Hb_005892_070 Hb_000905_070--Hb_005892_070 Hb_000100_050 Hb_000100_050 Hb_000905_070--Hb_000100_050 Hb_011978_010 Hb_011978_010 Hb_000905_070--Hb_011978_010 Hb_000375_380 Hb_000375_380 Hb_000905_070--Hb_000375_380 Hb_171108_010--Hb_002493_030 Hb_004007_150 Hb_004007_150 Hb_171108_010--Hb_004007_150 Hb_043655_010 Hb_043655_010 Hb_171108_010--Hb_043655_010 Hb_003534_040 Hb_003534_040 Hb_171108_010--Hb_003534_040 Hb_000922_310 Hb_000922_310 Hb_171108_010--Hb_000922_310 Hb_001691_050 Hb_001691_050 Hb_002493_030--Hb_001691_050 Hb_007634_020 Hb_007634_020 Hb_002493_030--Hb_007634_020 Hb_002493_030--Hb_004007_150 Hb_002232_290 Hb_002232_290 Hb_002493_030--Hb_002232_290 Hb_000153_040 Hb_000153_040 Hb_005892_070--Hb_000153_040 Hb_001125_030 Hb_001125_030 Hb_005892_070--Hb_001125_030 Hb_002759_130 Hb_002759_130 Hb_005892_070--Hb_002759_130 Hb_000200_060 Hb_000200_060 Hb_005892_070--Hb_000200_060 Hb_000345_480 Hb_000345_480 Hb_005892_070--Hb_000345_480 Hb_000100_050--Hb_011978_010 Hb_000100_050--Hb_000375_380 Hb_004324_380 Hb_004324_380 Hb_000100_050--Hb_004324_380 Hb_027393_020 Hb_027393_020 Hb_000100_050--Hb_027393_020 Hb_007008_020 Hb_007008_020 Hb_000100_050--Hb_007008_020 Hb_046727_010 Hb_046727_010 Hb_000100_050--Hb_046727_010 Hb_011978_010--Hb_000375_380 Hb_011978_010--Hb_004324_380 Hb_011978_010--Hb_027393_020 Hb_011978_010--Hb_007008_020 Hb_011978_010--Hb_046727_010 Hb_000375_380--Hb_004324_380 Hb_000375_380--Hb_027393_020 Hb_000375_380--Hb_007008_020 Hb_000375_380--Hb_046727_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.80041 0.0891425 0.132207 0.022599 2.53869 0.229346
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0202585 0.159017

CAGE analysis