Hb_000905_100

Information

Type transcription factor
Description TF Family: bHLH
Location Contig905: 109236-112688
Sequence    

Annotation

kegg
ID rcu:RCOM_1526050
description DNA binding protein, putative
nr
ID XP_012065523.1
description PREDICTED: transcription factor bHLH130-like isoform X1 [Jatropha curcas]
swissprot
ID Q66GR3
description Transcription factor bHLH130 OS=Arabidopsis thaliana GN=BHLH130 PE=1 SV=1
trembl
ID A0A067LGX8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16731 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh130-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61994: 110475-112190
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000905_100 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH130-like isoform X1 [Jatropha curcas]
2 Hb_000836_090 0.0948911863 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
3 Hb_000809_130 0.1064961573 - - PREDICTED: peroxidase 10 isoform X3 [Jatropha curcas]
4 Hb_000002_370 0.1067420787 - - PREDICTED: uncharacterized protein LOC105632103 [Jatropha curcas]
5 Hb_002053_180 0.1084681334 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
6 Hb_000027_160 0.1106400387 - - PREDICTED: probable protein phosphatase 2C 15 isoform X3 [Jatropha curcas]
7 Hb_033006_020 0.1148482568 - - Aspartate aminotransferase, putative [Ricinus communis]
8 Hb_001307_020 0.1175405388 - - electron carrier, putative [Ricinus communis]
9 Hb_000103_370 0.1185928323 - - PREDICTED: protein argonaute 10 [Jatropha curcas]
10 Hb_004223_080 0.1195545268 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
11 Hb_002046_130 0.1234938409 - - PREDICTED: UDP-sugar transporter sqv-7-like [Jatropha curcas]
12 Hb_000349_250 0.1263426885 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g12460 [Jatropha curcas]
13 Hb_004567_070 0.1302443735 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007130_020 0.1349656743 - - -
15 Hb_000465_020 0.1366621618 - - PREDICTED: uncharacterized protein LOC105632280 [Jatropha curcas]
16 Hb_006922_020 0.1384542656 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 34 [Jatropha curcas]
17 Hb_071674_010 0.1393798623 transcription factor TF Family: WRKY hypothetical protein POPTR_0006s10950g [Populus trichocarpa]
18 Hb_000199_040 0.1411746775 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
19 Hb_001366_390 0.1415281637 - - PREDICTED: uncharacterized protein LOC105642722 [Jatropha curcas]
20 Hb_003688_220 0.1418916289 - - unknown [Populus trichocarpa]

Gene co-expression network

sample Hb_000905_100 Hb_000905_100 Hb_000836_090 Hb_000836_090 Hb_000905_100--Hb_000836_090 Hb_000809_130 Hb_000809_130 Hb_000905_100--Hb_000809_130 Hb_000002_370 Hb_000002_370 Hb_000905_100--Hb_000002_370 Hb_002053_180 Hb_002053_180 Hb_000905_100--Hb_002053_180 Hb_000027_160 Hb_000027_160 Hb_000905_100--Hb_000027_160 Hb_033006_020 Hb_033006_020 Hb_000905_100--Hb_033006_020 Hb_000836_090--Hb_033006_020 Hb_000836_090--Hb_002053_180 Hb_007130_020 Hb_007130_020 Hb_000836_090--Hb_007130_020 Hb_000836_090--Hb_000002_370 Hb_000199_040 Hb_000199_040 Hb_000836_090--Hb_000199_040 Hb_004223_080 Hb_004223_080 Hb_000809_130--Hb_004223_080 Hb_000103_370 Hb_000103_370 Hb_000809_130--Hb_000103_370 Hb_006196_030 Hb_006196_030 Hb_000809_130--Hb_006196_030 Hb_000809_130--Hb_000002_370 Hb_002301_400 Hb_002301_400 Hb_000809_130--Hb_002301_400 Hb_000002_370--Hb_000199_040 Hb_000002_370--Hb_000103_370 Hb_003777_120 Hb_003777_120 Hb_000002_370--Hb_003777_120 Hb_000002_370--Hb_002053_180 Hb_004567_070 Hb_004567_070 Hb_000002_370--Hb_004567_070 Hb_002053_180--Hb_000199_040 Hb_000627_040 Hb_000627_040 Hb_002053_180--Hb_000627_040 Hb_007237_020 Hb_007237_020 Hb_002053_180--Hb_007237_020 Hb_006922_020 Hb_006922_020 Hb_002053_180--Hb_006922_020 Hb_002490_060 Hb_002490_060 Hb_002053_180--Hb_002490_060 Hb_000349_250 Hb_000349_250 Hb_000027_160--Hb_000349_250 Hb_024714_090 Hb_024714_090 Hb_000027_160--Hb_024714_090 Hb_000027_160--Hb_002053_180 Hb_001571_080 Hb_001571_080 Hb_000027_160--Hb_001571_080 Hb_000086_470 Hb_000086_470 Hb_000027_160--Hb_000086_470 Hb_000645_260 Hb_000645_260 Hb_033006_020--Hb_000645_260 Hb_002311_280 Hb_002311_280 Hb_033006_020--Hb_002311_280 Hb_001377_120 Hb_001377_120 Hb_033006_020--Hb_001377_120 Hb_033006_020--Hb_007130_020 Hb_000465_020 Hb_000465_020 Hb_033006_020--Hb_000465_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0248119 5.21056 18.3161 9.35932 0.0740069 0.560199
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.15108 0.178304 0.224782 0.836316 5.71851

CAGE analysis