Hb_000905_110

Information

Type -
Description -
Location Contig905: 117329-125805
Sequence    

Annotation

kegg
ID rcu:RCOM_1526370
description arginine/serine rich splicing factor sf4/14, putative
nr
ID XP_002513189.1
description arginine/serine rich splicing factor sf4/14, putative [Ricinus communis]
swissprot
ID Q94C11
description SURP and G-patch domain-containing protein 1-like protein OS=Arabidopsis thaliana GN=At3g52120 PE=2 SV=1
trembl
ID B9RHH0
description Arginine/serine rich splicing factor sf4/14, putative OS=Ricinus communis GN=RCOM_1526370 PE=4 SV=1
Gene Ontology
ID GO:0003723
description surp and g-patch domain-containing protein 1-like protein isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61995: 117713-126086 , PASA_asmbl_61996: 121314-121959 , PASA_asmbl_61997: 123768-123886 , PASA_asmbl_61998: 124033-124326
cDNA
(Sanger)
(ID:Location)		 016_I12.ab1: 125818-126086

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000905_110 0.0 - - arginine/serine rich splicing factor sf4/14, putative [Ricinus communis]
2 Hb_000336_210 0.0463397049 - - PREDICTED: probable adenylate kinase 7, mitochondrial [Jatropha curcas]
3 Hb_008847_030 0.0551706619 - - PREDICTED: TLD domain-containing protein 1 [Jatropha curcas]
4 Hb_001021_150 0.0566753822 - - PREDICTED: metal tolerance protein C1 [Jatropha curcas]
5 Hb_014834_150 0.0592329687 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 1, mitochondrial isoform X1 [Jatropha curcas]
6 Hb_123915_040 0.0601970536 - - PREDICTED: uncharacterized protein LOC105633952 [Jatropha curcas]
7 Hb_021419_030 0.0650065443 - - hypothetical protein glysoja_023295 [Glycine soja]
8 Hb_008616_050 0.0670972415 - - PREDICTED: putative deoxyribonuclease TATDN1 [Jatropha curcas]
9 Hb_003938_090 0.0694032337 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000417_130 0.0704055771 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
11 Hb_000816_250 0.0709413594 - - PREDICTED: uncharacterized protein LOC105649197 isoform X1 [Jatropha curcas]
12 Hb_003416_010 0.0711784385 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 13 homolog B [Malus domestica]
13 Hb_002553_060 0.0722337181 - - PREDICTED: electron transfer flavoprotein subunit beta, mitochondrial [Jatropha curcas]
14 Hb_001456_060 0.0731311835 - - hypothetical protein JCGZ_17090 [Jatropha curcas]
15 Hb_164390_010 0.0739517108 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
16 Hb_003861_060 0.0739794956 - - PREDICTED: treacle protein [Jatropha curcas]
17 Hb_000589_120 0.0743397252 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30 [Gossypium raimondii]
18 Hb_001318_280 0.0746713676 - - Protein FAM18B, putative [Ricinus communis]
19 Hb_002641_060 0.0756976543 - - prefoldin subunit, putative [Ricinus communis]
20 Hb_000875_080 0.0762748185 - - PREDICTED: (+)-delta-cadinene synthase isozyme XC14-like isoform X2 [Gossypium raimondii]

Gene co-expression network

sample Hb_000905_110 Hb_000905_110 Hb_000336_210 Hb_000336_210 Hb_000905_110--Hb_000336_210 Hb_008847_030 Hb_008847_030 Hb_000905_110--Hb_008847_030 Hb_001021_150 Hb_001021_150 Hb_000905_110--Hb_001021_150 Hb_014834_150 Hb_014834_150 Hb_000905_110--Hb_014834_150 Hb_123915_040 Hb_123915_040 Hb_000905_110--Hb_123915_040 Hb_021419_030 Hb_021419_030 Hb_000905_110--Hb_021419_030 Hb_000875_080 Hb_000875_080 Hb_000336_210--Hb_000875_080 Hb_000336_210--Hb_014834_150 Hb_002272_050 Hb_002272_050 Hb_000336_210--Hb_002272_050 Hb_171900_090 Hb_171900_090 Hb_000336_210--Hb_171900_090 Hb_000297_160 Hb_000297_160 Hb_000336_210--Hb_000297_160 Hb_008847_030--Hb_001021_150 Hb_003938_090 Hb_003938_090 Hb_008847_030--Hb_003938_090 Hb_003416_010 Hb_003416_010 Hb_008847_030--Hb_003416_010 Hb_000621_010 Hb_000621_010 Hb_008847_030--Hb_000621_010 Hb_002641_060 Hb_002641_060 Hb_008847_030--Hb_002641_060 Hb_002592_060 Hb_002592_060 Hb_001021_150--Hb_002592_060 Hb_001946_400 Hb_001946_400 Hb_001021_150--Hb_001946_400 Hb_000035_470 Hb_000035_470 Hb_001021_150--Hb_000035_470 Hb_006831_140 Hb_006831_140 Hb_001021_150--Hb_006831_140 Hb_003861_060 Hb_003861_060 Hb_014834_150--Hb_003861_060 Hb_003513_010 Hb_003513_010 Hb_014834_150--Hb_003513_010 Hb_000816_250 Hb_000816_250 Hb_014834_150--Hb_000816_250 Hb_003647_140 Hb_003647_140 Hb_014834_150--Hb_003647_140 Hb_003428_010 Hb_003428_010 Hb_014834_150--Hb_003428_010 Hb_004052_080 Hb_004052_080 Hb_014834_150--Hb_004052_080 Hb_000417_130 Hb_000417_130 Hb_123915_040--Hb_000417_130 Hb_000317_470 Hb_000317_470 Hb_123915_040--Hb_000317_470 Hb_004254_090 Hb_004254_090 Hb_123915_040--Hb_004254_090 Hb_001357_250 Hb_001357_250 Hb_123915_040--Hb_001357_250 Hb_123915_040--Hb_001021_150 Hb_001408_140 Hb_001408_140 Hb_021419_030--Hb_001408_140 Hb_000915_180 Hb_000915_180 Hb_021419_030--Hb_000915_180 Hb_021419_030--Hb_123915_040 Hb_000340_530 Hb_000340_530 Hb_021419_030--Hb_000340_530 Hb_021419_030--Hb_000336_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.5021 19.0127 29.507 26.8798 28.0192 19.845
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.9119 35.5749 21.51 27.9203 25.2588

CAGE analysis