Hb_000905_170

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig905: 173096-179169
Sequence    

Annotation

kegg
ID pop:POPTR_0004s20690g
description hypothetical protein
nr
ID XP_006384740.1
description hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
swissprot
ID Q9LRR4
description Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1
trembl
ID U5GML6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s20690g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62006: 173734-174191 , PASA_asmbl_62007: 174508-174932 , PASA_asmbl_62009: 177036-177624 , PASA_asmbl_62010: 179523-181395
cDNA
(Sanger)
(ID:Location)		 014_B15.ab1: 179610-181393 , 020_D07.ab1: 179583-181389 , 024_D11.ab1: 179891-181389 , 026_F20.ab1: 179924-181393 , 033_H06.ab1: 179616-179725 , 035_O18.ab1: 179610-181389 , 040_N13.ab1: 179613-181395 , 049_P04.ab1: 179617-179731

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000905_170 0.0 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
2 Hb_000227_060 0.0802545101 transcription factor TF Family: NF-YC hypothetical protein POPTR_0010s03730g [Populus trichocarpa]
3 Hb_049436_010 0.0985676731 - - PREDICTED: UPF0202 protein At1g10490-like [Glycine max]
4 Hb_000856_180 0.1019408865 - - calcium-dependent protein kinase [Hevea brasiliensis]
5 Hb_011930_070 0.1114983237 - - PREDICTED: probable AMP deaminase [Jatropha curcas]
6 Hb_003071_020 0.1144972175 transcription factor TF Family: ARF Auxin response factor [Medicago truncatula]
7 Hb_000009_330 0.1302530969 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
8 Hb_000140_410 0.1309550816 - - PREDICTED: uncharacterized protein At5g41620 isoform X1 [Jatropha curcas]
9 Hb_002153_030 0.134791576 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
10 Hb_000140_480 0.1356468645 - - PREDICTED: uncharacterized protein LOC105637350 [Jatropha curcas]
11 Hb_001427_070 0.1358337646 - - PREDICTED: xaa-Pro dipeptidase [Jatropha curcas]
12 Hb_008066_070 0.1382211154 transcription factor TF Family: ERF AP2/ERF super family protein [Hevea brasiliensis]
13 Hb_002005_090 0.1384550956 - - conserved hypothetical protein [Ricinus communis]
14 Hb_010407_170 0.1385776078 - - PREDICTED: actin-depolymerizing factor-like [Jatropha curcas]
15 Hb_002391_210 0.1389212219 - - PREDICTED: putative F-box protein At1g65770 [Jatropha curcas]
16 Hb_001268_120 0.1403566647 - - conserved hypothetical protein [Ricinus communis]
17 Hb_032808_030 0.1407548138 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
18 Hb_000402_190 0.141184443 - - PREDICTED: F-box protein At1g70590 [Jatropha curcas]
19 Hb_001104_110 0.1422203853 - - PREDICTED: splicing factor U2af small subunit B-like [Populus euphratica]
20 Hb_000631_120 0.142766396 - - hypothetical protein CISIN_1g0431902mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_000905_170 Hb_000905_170 Hb_000227_060 Hb_000227_060 Hb_000905_170--Hb_000227_060 Hb_049436_010 Hb_049436_010 Hb_000905_170--Hb_049436_010 Hb_000856_180 Hb_000856_180 Hb_000905_170--Hb_000856_180 Hb_011930_070 Hb_011930_070 Hb_000905_170--Hb_011930_070 Hb_003071_020 Hb_003071_020 Hb_000905_170--Hb_003071_020 Hb_000009_330 Hb_000009_330 Hb_000905_170--Hb_000009_330 Hb_000200_280 Hb_000200_280 Hb_000227_060--Hb_000200_280 Hb_000390_100 Hb_000390_100 Hb_000227_060--Hb_000390_100 Hb_000227_060--Hb_049436_010 Hb_001514_130 Hb_001514_130 Hb_000227_060--Hb_001514_130 Hb_000227_060--Hb_000856_180 Hb_001031_090 Hb_001031_090 Hb_049436_010--Hb_001031_090 Hb_004934_050 Hb_004934_050 Hb_049436_010--Hb_004934_050 Hb_000920_300 Hb_000920_300 Hb_049436_010--Hb_000920_300 Hb_002477_090 Hb_002477_090 Hb_049436_010--Hb_002477_090 Hb_119530_010 Hb_119530_010 Hb_049436_010--Hb_119530_010 Hb_000856_180--Hb_003071_020 Hb_032808_030 Hb_032808_030 Hb_000856_180--Hb_032808_030 Hb_002046_020 Hb_002046_020 Hb_000856_180--Hb_002046_020 Hb_000236_410 Hb_000236_410 Hb_000856_180--Hb_000236_410 Hb_000856_180--Hb_000009_330 Hb_002005_090 Hb_002005_090 Hb_011930_070--Hb_002005_090 Hb_012799_120 Hb_012799_120 Hb_011930_070--Hb_012799_120 Hb_001019_180 Hb_001019_180 Hb_011930_070--Hb_001019_180 Hb_002110_030 Hb_002110_030 Hb_011930_070--Hb_002110_030 Hb_011930_070--Hb_000227_060 Hb_006922_010 Hb_006922_010 Hb_003071_020--Hb_006922_010 Hb_003071_020--Hb_000236_410 Hb_003071_020--Hb_002046_020 Hb_003071_020--Hb_001019_180 Hb_001840_090 Hb_001840_090 Hb_003071_020--Hb_001840_090 Hb_000059_020 Hb_000059_020 Hb_000009_330--Hb_000059_020 Hb_004994_090 Hb_004994_090 Hb_000009_330--Hb_004994_090 Hb_000169_170 Hb_000169_170 Hb_000009_330--Hb_000169_170 Hb_000862_040 Hb_000862_040 Hb_000009_330--Hb_000862_040 Hb_000009_330--Hb_000236_410 Hb_007054_040 Hb_007054_040 Hb_000009_330--Hb_007054_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.475436 1.44676 0.283797 0.472406 0.314592 0.658641
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.493421 0.540873 0.467155 1.44903 0.238331

CAGE analysis