Hb_000906_060

Information

Type -
Description -
Location Contig906: 103598-105664
Sequence    

Annotation

kegg
ID pmum:103342917
description putative pentatricopeptide repeat-containing protein At3g08820
nr
ID XP_011019049.1
description PREDICTED: putative pentatricopeptide repeat-containing protein At3g08820 [Populus euphratica]
swissprot
ID Q9SR82
description Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
trembl
ID B9IGL4
description Pentatricopeptide repeat-containing family protein OS=Populus trichocarpa GN=POPTR_0016s13660g PE=4 SV=2
Gene Ontology
ID GO:0000166
description pentatricopeptide repeat-containing protein at3g08820

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62033: 105994-106370
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000906_060 0.0 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g08820 [Populus euphratica]
2 Hb_004724_360 0.083997269 - - OTU-like cysteine protease family protein [Populus trichocarpa]
3 Hb_001504_160 0.0857073444 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
4 Hb_012016_020 0.0896909333 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105636265 [Jatropha curcas]
5 Hb_012654_010 0.0913248308 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]
6 Hb_002341_030 0.0924655919 - - PREDICTED: transcription factor bHLH140 [Jatropha curcas]
7 Hb_001575_080 0.0936285314 - - PREDICTED: villin-4-like [Jatropha curcas]
8 Hb_004656_060 0.0936864279 - - PREDICTED: uncharacterized protein LOC105634581 [Jatropha curcas]
9 Hb_000001_180 0.0946103054 - - PREDICTED: uncharacterized protein LOC105648978 [Jatropha curcas]
10 Hb_000076_080 0.0948600945 - - PREDICTED: protein MOS2 [Jatropha curcas]
11 Hb_000270_140 0.0955727368 - - PREDICTED: uncharacterized protein LOC105640478 isoform X1 [Jatropha curcas]
12 Hb_175338_020 0.0958876444 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
13 Hb_000684_420 0.096374873 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
14 Hb_000003_790 0.0963872142 - - PREDICTED: nuclear poly(A) polymerase 4-like [Jatropha curcas]
15 Hb_000327_310 0.0967587741 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
16 Hb_000152_890 0.0980102295 - - hypothetical protein JCGZ_26265 [Jatropha curcas]
17 Hb_000422_140 0.0999918274 - - PREDICTED: apoptosis-inducing factor 2-like isoform X1 [Jatropha curcas]
18 Hb_005214_160 0.1004505759 - - PREDICTED: heat shock 70 kDa protein, mitochondrial [Jatropha curcas]
19 Hb_004678_020 0.1010911318 - - PREDICTED: protein YIF1B [Jatropha curcas]
20 Hb_004225_130 0.1020238074 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105628060 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000906_060 Hb_000906_060 Hb_004724_360 Hb_004724_360 Hb_000906_060--Hb_004724_360 Hb_001504_160 Hb_001504_160 Hb_000906_060--Hb_001504_160 Hb_012016_020 Hb_012016_020 Hb_000906_060--Hb_012016_020 Hb_012654_010 Hb_012654_010 Hb_000906_060--Hb_012654_010 Hb_002341_030 Hb_002341_030 Hb_000906_060--Hb_002341_030 Hb_001575_080 Hb_001575_080 Hb_000906_060--Hb_001575_080 Hb_000076_080 Hb_000076_080 Hb_004724_360--Hb_000076_080 Hb_000327_310 Hb_000327_310 Hb_004724_360--Hb_000327_310 Hb_004724_360--Hb_001504_160 Hb_000684_420 Hb_000684_420 Hb_004724_360--Hb_000684_420 Hb_000001_180 Hb_000001_180 Hb_004724_360--Hb_000001_180 Hb_005295_040 Hb_005295_040 Hb_004724_360--Hb_005295_040 Hb_001504_160--Hb_000076_080 Hb_001504_160--Hb_012654_010 Hb_000230_330 Hb_000230_330 Hb_001504_160--Hb_000230_330 Hb_000107_100 Hb_000107_100 Hb_001504_160--Hb_000107_100 Hb_003384_030 Hb_003384_030 Hb_001504_160--Hb_003384_030 Hb_012016_020--Hb_002341_030 Hb_001871_040 Hb_001871_040 Hb_012016_020--Hb_001871_040 Hb_000453_080 Hb_000453_080 Hb_012016_020--Hb_000453_080 Hb_005399_010 Hb_005399_010 Hb_012016_020--Hb_005399_010 Hb_008528_010 Hb_008528_010 Hb_012016_020--Hb_008528_010 Hb_012654_010--Hb_000107_100 Hb_000139_250 Hb_000139_250 Hb_012654_010--Hb_000139_250 Hb_001057_010 Hb_001057_010 Hb_012654_010--Hb_001057_010 Hb_005214_160 Hb_005214_160 Hb_012654_010--Hb_005214_160 Hb_002701_080 Hb_002701_080 Hb_012654_010--Hb_002701_080 Hb_002725_070 Hb_002725_070 Hb_002341_030--Hb_002725_070 Hb_005635_010 Hb_005635_010 Hb_002341_030--Hb_005635_010 Hb_002928_060 Hb_002928_060 Hb_002341_030--Hb_002928_060 Hb_002341_030--Hb_001504_160 Hb_110364_010 Hb_110364_010 Hb_002341_030--Hb_110364_010 Hb_003018_160 Hb_003018_160 Hb_001575_080--Hb_003018_160 Hb_011497_010 Hb_011497_010 Hb_001575_080--Hb_011497_010 Hb_000116_280 Hb_000116_280 Hb_001575_080--Hb_000116_280 Hb_175338_020 Hb_175338_020 Hb_001575_080--Hb_175338_020 Hb_003847_120 Hb_003847_120 Hb_001575_080--Hb_003847_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.2824 1.0089 0.391678 0.257618 2.37582 2.42221
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.652791 0.753341 0.909884 0.442621 0.434618

CAGE analysis