Hb_000906_080

Information

Type -
Description -
Location Contig906: 136603-137811
Sequence    

Annotation

kegg
ID rcu:RCOM_0156780
description short chain alcohol dehydrogenase, putative (EC:1.1.1.100)
nr
ID XP_002533789.1
description short chain alcohol dehydrogenase, putative [Ricinus communis]
swissprot
ID Q9SCU0
description Short-chain dehydrogenase reductase 2a OS=Arabidopsis thaliana GN=SDR2a PE=3 SV=1
trembl
ID B9T6C0
description Short chain alcohol dehydrogenase, putative OS=Ricinus communis GN=RCOM_0156780 PE=3 SV=1
Gene Ontology
ID GO:0004316
description short-chain dehydrogenase reductase 2a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62039: 136631-137839
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000906_080 0.0 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
2 Hb_001564_120 0.0613176589 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic [Populus euphratica]
3 Hb_000099_120 0.0715471463 - - PREDICTED: GDT1-like protein 1, chloroplastic isoform X3 [Jatropha curcas]
4 Hb_005063_030 0.0780419887 - - Photosystem II reaction center W protein, chloroplast precursor, putative [Ricinus communis]
5 Hb_005054_120 0.0793274539 - - PREDICTED: sedoheptulose-1,7-bisphosphatase, chloroplastic [Jatropha curcas]
6 Hb_005305_070 0.0805808321 - - hypothetical protein POPTR_0001s26540g [Populus trichocarpa]
7 Hb_000098_040 0.0807528727 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
8 Hb_000545_180 0.0840793579 - - Photosystem II stability/assembly factor HCF136, chloroplast precursor, putative [Ricinus communis]
9 Hb_000101_330 0.0861466355 - - -
10 Hb_001007_070 0.0870500455 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
11 Hb_001999_230 0.0879309834 - - PREDICTED: uncharacterized protein LOC105630678 [Jatropha curcas]
12 Hb_000077_380 0.0886554136 - - PREDICTED: protochlorophyllide reductase [Jatropha curcas]
13 Hb_153258_040 0.0887274255 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
14 Hb_001958_060 0.0891473229 - - PREDICTED: calcium uptake protein 1, mitochondrial-like [Jatropha curcas]
15 Hb_001975_100 0.0908128049 - - chlorophyll a-b binding protein 151, chloroplastic [Jatropha curcas]
16 Hb_002701_250 0.0917103921 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
17 Hb_000352_230 0.0920963521 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic isoform X2 [Jatropha curcas]
18 Hb_001699_140 0.094870983 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
19 Hb_000390_160 0.0954378317 - - PREDICTED: adenosine kinase [Jatropha curcas]
20 Hb_000392_470 0.0975240418 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000906_080 Hb_000906_080 Hb_001564_120 Hb_001564_120 Hb_000906_080--Hb_001564_120 Hb_000099_120 Hb_000099_120 Hb_000906_080--Hb_000099_120 Hb_005063_030 Hb_005063_030 Hb_000906_080--Hb_005063_030 Hb_005054_120 Hb_005054_120 Hb_000906_080--Hb_005054_120 Hb_005305_070 Hb_005305_070 Hb_000906_080--Hb_005305_070 Hb_000098_040 Hb_000098_040 Hb_000906_080--Hb_000098_040 Hb_001564_120--Hb_005063_030 Hb_001564_120--Hb_000098_040 Hb_001999_230 Hb_001999_230 Hb_001564_120--Hb_001999_230 Hb_001975_100 Hb_001975_100 Hb_001564_120--Hb_001975_100 Hb_001564_120--Hb_000099_120 Hb_001007_070 Hb_001007_070 Hb_001564_120--Hb_001007_070 Hb_000099_120--Hb_001007_070 Hb_000099_120--Hb_001999_230 Hb_000392_470 Hb_000392_470 Hb_000099_120--Hb_000392_470 Hb_004338_050 Hb_004338_050 Hb_000099_120--Hb_004338_050 Hb_000254_130 Hb_000254_130 Hb_000099_120--Hb_000254_130 Hb_005063_030--Hb_001975_100 Hb_005063_030--Hb_000254_130 Hb_000101_330 Hb_000101_330 Hb_005063_030--Hb_000101_330 Hb_001292_030 Hb_001292_030 Hb_005063_030--Hb_001292_030 Hb_005063_030--Hb_001999_230 Hb_002852_010 Hb_002852_010 Hb_005054_120--Hb_002852_010 Hb_005054_120--Hb_001007_070 Hb_005054_120--Hb_005063_030 Hb_005054_120--Hb_001564_120 Hb_002259_090 Hb_002259_090 Hb_005054_120--Hb_002259_090 Hb_005054_120--Hb_001999_230 Hb_001699_140 Hb_001699_140 Hb_005305_070--Hb_001699_140 Hb_007904_110 Hb_007904_110 Hb_005305_070--Hb_007904_110 Hb_000017_210 Hb_000017_210 Hb_005305_070--Hb_000017_210 Hb_000483_440 Hb_000483_440 Hb_005305_070--Hb_000483_440 Hb_000482_180 Hb_000482_180 Hb_005305_070--Hb_000482_180 Hb_000352_230 Hb_000352_230 Hb_000098_040--Hb_000352_230 Hb_000307_100 Hb_000307_100 Hb_000098_040--Hb_000307_100 Hb_000329_430 Hb_000329_430 Hb_000098_040--Hb_000329_430 Hb_009771_090 Hb_009771_090 Hb_000098_040--Hb_009771_090 Hb_002809_030 Hb_002809_030 Hb_000098_040--Hb_002809_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.46196 21.0207 11.6258 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.139199 0.693417 0 0.761928 49.9674

CAGE analysis