Hb_000906_100

Information

Type -
Description -
Location Contig906: 148532-166439
Sequence    

Annotation

kegg
ID rcu:RCOM_0157020
description D-alanine-D-alanine ligase, putative (EC:6.3.2.4)
nr
ID XP_012089736.1
description PREDICTED: uncharacterized protein LOC105648070 [Jatropha curcas]
swissprot
ID Q7NV72
description D-alanine--D-alanine ligase A OS=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=ddlA PE=3 SV=1
trembl
ID A0A067JS34
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00392 PE=4 SV=1
Gene Ontology
ID GO:0009507
description d-alanine--d-alanine ligase family protein isoform 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62042: 148745-157674 , PASA_asmbl_62043: 158175-160885
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000906_100 0.0 - - PREDICTED: uncharacterized protein LOC105648070 [Jatropha curcas]
2 Hb_000834_200 0.0783264292 - - PREDICTED: splicing factor, arginine/serine-rich 19 [Jatropha curcas]
3 Hb_000679_020 0.0785744763 transcription factor TF Family: HB PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
4 Hb_001999_290 0.0816468101 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
5 Hb_001498_010 0.0826395032 - - PREDICTED: uncharacterized protein LOC105648994 [Jatropha curcas]
6 Hb_000473_110 0.0833783583 - - PREDICTED: PP2A regulatory subunit TAP46 [Jatropha curcas]
7 Hb_003203_030 0.084201402 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
8 Hb_000046_190 0.08451006 - - PREDICTED: uncharacterized protein LOC105647118 [Jatropha curcas]
9 Hb_000661_030 0.0847871941 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
10 Hb_009486_060 0.0854183829 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
11 Hb_004079_060 0.0862110588 - - hypothetical protein JCGZ_07228 [Jatropha curcas]
12 Hb_000864_030 0.0874210203 - - PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1 isoform X2 [Jatropha curcas]
13 Hb_000099_160 0.0883455285 - - PREDICTED: potassium transporter 3 isoform X2 [Populus euphratica]
14 Hb_000671_070 0.0887137359 - - PREDICTED: uncharacterized protein LOC105630621 [Jatropha curcas]
15 Hb_018118_010 0.0892210314 - - DNA polymerase I, putative [Ricinus communis]
16 Hb_006816_430 0.0894110396 - - PREDICTED: topless-related protein 3 isoform X1 [Jatropha curcas]
17 Hb_001191_120 0.090004429 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
18 Hb_005488_170 0.0905629747 - - PREDICTED: septin and tuftelin-interacting protein 1 homolog 1 [Jatropha curcas]
19 Hb_097185_010 0.0907995966 - - PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
20 Hb_002600_060 0.093116707 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_000906_100 Hb_000906_100 Hb_000834_200 Hb_000834_200 Hb_000906_100--Hb_000834_200 Hb_000679_020 Hb_000679_020 Hb_000906_100--Hb_000679_020 Hb_001999_290 Hb_001999_290 Hb_000906_100--Hb_001999_290 Hb_001498_010 Hb_001498_010 Hb_000906_100--Hb_001498_010 Hb_000473_110 Hb_000473_110 Hb_000906_100--Hb_000473_110 Hb_003203_030 Hb_003203_030 Hb_000906_100--Hb_003203_030 Hb_000174_170 Hb_000174_170 Hb_000834_200--Hb_000174_170 Hb_008059_010 Hb_008059_010 Hb_000834_200--Hb_008059_010 Hb_008221_180 Hb_008221_180 Hb_000834_200--Hb_008221_180 Hb_000856_420 Hb_000856_420 Hb_000834_200--Hb_000856_420 Hb_000834_200--Hb_000679_020 Hb_000864_030 Hb_000864_030 Hb_000679_020--Hb_000864_030 Hb_000661_030 Hb_000661_030 Hb_000679_020--Hb_000661_030 Hb_000679_020--Hb_000174_170 Hb_000563_420 Hb_000563_420 Hb_000679_020--Hb_000563_420 Hb_004920_090 Hb_004920_090 Hb_000679_020--Hb_004920_090 Hb_001157_240 Hb_001157_240 Hb_001999_290--Hb_001157_240 Hb_000174_270 Hb_000174_270 Hb_001999_290--Hb_000174_270 Hb_004079_060 Hb_004079_060 Hb_001999_290--Hb_004079_060 Hb_005736_020 Hb_005736_020 Hb_001999_290--Hb_005736_020 Hb_001004_060 Hb_001004_060 Hb_001999_290--Hb_001004_060 Hb_062226_070 Hb_062226_070 Hb_001999_290--Hb_062226_070 Hb_000039_150 Hb_000039_150 Hb_001498_010--Hb_000039_150 Hb_000037_190 Hb_000037_190 Hb_001498_010--Hb_000037_190 Hb_004680_120 Hb_004680_120 Hb_001498_010--Hb_004680_120 Hb_001498_010--Hb_003203_030 Hb_002055_040 Hb_002055_040 Hb_001498_010--Hb_002055_040 Hb_004003_040 Hb_004003_040 Hb_001498_010--Hb_004003_040 Hb_000473_110--Hb_004079_060 Hb_006420_040 Hb_006420_040 Hb_000473_110--Hb_006420_040 Hb_000441_120 Hb_000441_120 Hb_000473_110--Hb_000441_120 Hb_001814_030 Hb_001814_030 Hb_000473_110--Hb_001814_030 Hb_002350_010 Hb_002350_010 Hb_000473_110--Hb_002350_010 Hb_000731_270 Hb_000731_270 Hb_000473_110--Hb_000731_270 Hb_000331_560 Hb_000331_560 Hb_003203_030--Hb_000331_560 Hb_018118_010 Hb_018118_010 Hb_003203_030--Hb_018118_010 Hb_005348_010 Hb_005348_010 Hb_003203_030--Hb_005348_010 Hb_006816_430 Hb_006816_430 Hb_003203_030--Hb_006816_430 Hb_001862_180 Hb_001862_180 Hb_003203_030--Hb_001862_180 Hb_001259_020 Hb_001259_020 Hb_003203_030--Hb_001259_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.0138 18.3749 12.8923 9.01507 20.3755 13.3949
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.4517 9.29343 14.5675 13.7189 27.4596

CAGE analysis