Hb_000907_040

Information

Type -
Description -
Location Contig907: 34304-37451
Sequence    

Annotation

kegg
ID rcu:RCOM_0446110
description ankyrin repeat-containing protein, putative
nr
ID XP_002533395.1
description ankyrin repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9C7A2
description Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1
trembl
ID B9T576
description Ankyrin repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0446110 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62049: 33833-36906 , PASA_asmbl_62050: 36974-37554
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000907_040 0.0 - - ankyrin repeat-containing protein, putative [Ricinus communis]
2 Hb_017895_010 0.1339533849 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Prunus mume]
3 Hb_101393_010 0.1938233369 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001032_030 0.2482019132 - - PREDICTED: 60S ribosomal protein L23a-like [Eucalyptus grandis]
5 Hb_001278_080 0.2508479402 transcription factor TF Family: AUX/IAA hypothetical protein JCGZ_09311 [Jatropha curcas]
6 Hb_002023_040 0.2607686056 - - -
7 Hb_012150_050 0.2774846638 - - protein binding protein, putative [Ricinus communis]
8 Hb_000053_050 0.2889908866 - - hypothetical protein F775_01878 [Aegilops tauschii]
9 Hb_001486_110 0.2903607799 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-11-like [Jatropha curcas]
10 Hb_131621_010 0.2933126473 - - hypothetical protein MIMGU_mgv1a004274mg [Erythranthe guttata]
11 Hb_007765_090 0.2975919051 - - unknown [Glycine max]
12 Hb_043999_010 0.2979906154 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
13 Hb_004021_110 0.300513935 - - -
14 Hb_002204_040 0.3056878373 - - hypothetical protein B456_008G181200 [Gossypium raimondii]
15 Hb_001105_060 0.3101017328 - - hypothetical protein CISIN_1g0045352mg, partial [Citrus sinensis]
16 Hb_000809_150 0.3109269371 - - -
17 Hb_001032_040 0.3156252262 - - PREDICTED: psbP-like protein 1, chloroplastic [Jatropha curcas]
18 Hb_000252_230 0.3210845528 - - hypothetical protein B456_008G160800 [Gossypium raimondii]
19 Hb_094437_010 0.3211382248 - - -
20 Hb_000705_310 0.3222892646 - - hypothetical protein POPTR_0001s03390g [Populus trichocarpa]

Gene co-expression network

sample Hb_000907_040 Hb_000907_040 Hb_017895_010 Hb_017895_010 Hb_000907_040--Hb_017895_010 Hb_101393_010 Hb_101393_010 Hb_000907_040--Hb_101393_010 Hb_001032_030 Hb_001032_030 Hb_000907_040--Hb_001032_030 Hb_001278_080 Hb_001278_080 Hb_000907_040--Hb_001278_080 Hb_002023_040 Hb_002023_040 Hb_000907_040--Hb_002023_040 Hb_012150_050 Hb_012150_050 Hb_000907_040--Hb_012150_050 Hb_017895_010--Hb_001278_080 Hb_017895_010--Hb_101393_010 Hb_017895_010--Hb_001032_030 Hb_000053_050 Hb_000053_050 Hb_017895_010--Hb_000053_050 Hb_002204_040 Hb_002204_040 Hb_017895_010--Hb_002204_040 Hb_000089_230 Hb_000089_230 Hb_101393_010--Hb_000089_230 Hb_003384_050 Hb_003384_050 Hb_101393_010--Hb_003384_050 Hb_000290_010 Hb_000290_010 Hb_101393_010--Hb_000290_010 Hb_002805_080 Hb_002805_080 Hb_101393_010--Hb_002805_080 Hb_115045_010 Hb_115045_010 Hb_001032_030--Hb_115045_010 Hb_011781_040 Hb_011781_040 Hb_001032_030--Hb_011781_040 Hb_002540_040 Hb_002540_040 Hb_001032_030--Hb_002540_040 Hb_094437_010 Hb_094437_010 Hb_001032_030--Hb_094437_010 Hb_001278_080--Hb_002023_040 Hb_021068_030 Hb_021068_030 Hb_001278_080--Hb_021068_030 Hb_001278_080--Hb_000053_050 Hb_002368_090 Hb_002368_090 Hb_001278_080--Hb_002368_090 Hb_001278_080--Hb_002204_040 Hb_001810_020 Hb_001810_020 Hb_002023_040--Hb_001810_020 Hb_002023_040--Hb_021068_030 Hb_000066_180 Hb_000066_180 Hb_002023_040--Hb_000066_180 Hb_002023_040--Hb_000053_050 Hb_000193_030 Hb_000193_030 Hb_002023_040--Hb_000193_030 Hb_187459_010 Hb_187459_010 Hb_012150_050--Hb_187459_010 Hb_057486_010 Hb_057486_010 Hb_012150_050--Hb_057486_010 Hb_012150_050--Hb_002204_040 Hb_001762_070 Hb_001762_070 Hb_012150_050--Hb_001762_070 Hb_000589_320 Hb_000589_320 Hb_012150_050--Hb_000589_320 Hb_000696_320 Hb_000696_320 Hb_012150_050--Hb_000696_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.099385 1.49064 0.826233 0 3.59815
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0342779 0

CAGE analysis