Hb_000907_090

Information

Type transcription factor
Description TF Family: C2H2
Location Contig907: 103679-106457
Sequence    

Annotation

kegg
ID rcu:RCOM_0360090
description nucleic acid binding protein, putative
nr
ID XP_002534293.1
description nucleic acid binding protein, putative [Ricinus communis]
swissprot
ID F4IPE3
description Protein SHOOT GRAVITROPISM 5 OS=Arabidopsis thaliana GN=SGR5 PE=1 SV=1
trembl
ID B9T7S4
description Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_0360090 PE=4 SV=1
Gene Ontology
ID GO:0003676
description protein shoot gravitropism 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62054: 103918-106244 , PASA_asmbl_62055: 104255-106045
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000907_090 0.0 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
2 Hb_004994_260 0.0898175702 - - Remorin, putative [Ricinus communis]
3 Hb_002214_050 0.0923027086 - - PREDICTED: probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 [Jatropha curcas]
4 Hb_004738_010 0.0964812509 - - PREDICTED: N-acetyl-D-glucosamine kinase-like [Jatropha curcas]
5 Hb_162275_030 0.1116393467 - - PREDICTED: uncharacterized protein LOC105646638 [Jatropha curcas]
6 Hb_010344_040 0.1133761172 - - PREDICTED: uncharacterized protein LOC105636452 [Jatropha curcas]
7 Hb_002735_060 0.1180578627 - - PREDICTED: desumoylating isopeptidase 1 [Jatropha curcas]
8 Hb_001006_180 0.1189177097 - - PREDICTED: endonuclease V-like [Jatropha curcas]
9 Hb_001711_030 0.120027574 - - PREDICTED: uncharacterized protein LOC105642409 [Jatropha curcas]
10 Hb_001863_480 0.1203442023 - - PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]
11 Hb_001687_040 0.1204452758 - - actin-depolymerizing factor [Hevea brasiliensis]
12 Hb_007926_060 0.1211389083 - - ubiquitin-conjugating enzyme E2 variant 1D [Arabidopsis thaliana]
13 Hb_148121_010 0.1247700394 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001912_010 0.1278495953 - - PREDICTED: uncharacterized protein LOC105636600 [Jatropha curcas]
15 Hb_003050_230 0.1283255326 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001437_220 0.1297970279 - - Transmembrane protein, putative [Ricinus communis]
17 Hb_000333_090 0.1298398382 - - PREDICTED: uncharacterized protein LOC102617374 isoform X1 [Citrus sinensis]
18 Hb_002119_120 0.1300275885 - - PREDICTED: anthranilate synthase beta subunit 1, chloroplastic-like [Jatropha curcas]
19 Hb_007140_020 0.1318646589 - - hypothetical protein CICLE_v10008419mg [Citrus clementina]
20 Hb_002539_080 0.1319152315 - - PREDICTED: triose phosphate/phosphate translocator, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_000907_090 Hb_000907_090 Hb_004994_260 Hb_004994_260 Hb_000907_090--Hb_004994_260 Hb_002214_050 Hb_002214_050 Hb_000907_090--Hb_002214_050 Hb_004738_010 Hb_004738_010 Hb_000907_090--Hb_004738_010 Hb_162275_030 Hb_162275_030 Hb_000907_090--Hb_162275_030 Hb_010344_040 Hb_010344_040 Hb_000907_090--Hb_010344_040 Hb_002735_060 Hb_002735_060 Hb_000907_090--Hb_002735_060 Hb_004994_260--Hb_002214_050 Hb_007926_060 Hb_007926_060 Hb_004994_260--Hb_007926_060 Hb_004994_260--Hb_010344_040 Hb_000722_040 Hb_000722_040 Hb_004994_260--Hb_000722_040 Hb_023386_010 Hb_023386_010 Hb_004994_260--Hb_023386_010 Hb_010172_030 Hb_010172_030 Hb_002214_050--Hb_010172_030 Hb_001437_220 Hb_001437_220 Hb_002214_050--Hb_001437_220 Hb_000333_090 Hb_000333_090 Hb_002214_050--Hb_000333_090 Hb_000362_210 Hb_000362_210 Hb_002214_050--Hb_000362_210 Hb_002119_120 Hb_002119_120 Hb_004738_010--Hb_002119_120 Hb_001863_480 Hb_001863_480 Hb_004738_010--Hb_001863_480 Hb_001439_170 Hb_001439_170 Hb_004738_010--Hb_001439_170 Hb_001711_030 Hb_001711_030 Hb_004738_010--Hb_001711_030 Hb_000032_040 Hb_000032_040 Hb_004738_010--Hb_000032_040 Hb_001006_180 Hb_001006_180 Hb_162275_030--Hb_001006_180 Hb_001762_060 Hb_001762_060 Hb_162275_030--Hb_001762_060 Hb_162275_030--Hb_002735_060 Hb_162275_030--Hb_002119_120 Hb_007382_150 Hb_007382_150 Hb_162275_030--Hb_007382_150 Hb_000069_550 Hb_000069_550 Hb_162275_030--Hb_000069_550 Hb_010344_040--Hb_000333_090 Hb_010344_040--Hb_010172_030 Hb_000567_170 Hb_000567_170 Hb_010344_040--Hb_000567_170 Hb_001912_010 Hb_001912_010 Hb_010344_040--Hb_001912_010 Hb_010344_040--Hb_002214_050 Hb_000922_270 Hb_000922_270 Hb_010344_040--Hb_000922_270 Hb_157022_020 Hb_157022_020 Hb_002735_060--Hb_157022_020 Hb_002539_080 Hb_002539_080 Hb_002735_060--Hb_002539_080 Hb_092100_020 Hb_092100_020 Hb_002735_060--Hb_092100_020 Hb_002735_060--Hb_001863_480 Hb_002716_070 Hb_002716_070 Hb_002735_060--Hb_002716_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.8862 6.46443 6.32232 21.0679 12.8721 28.7704
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
93.5229 53.637 53.8995 5.82633 6.73545

CAGE analysis