Hb_000907_100

Information

Type transcription factor
Description TF Family: zf-HD
Location Contig907: 116234-116615
Sequence    

Annotation

kegg
ID pop:POPTR_0012s03770g
description POPTRDRAFT_421740; hypothetical protein
nr
ID XP_002318316.2
description hypothetical protein POPTR_0012s03770g, partial [Populus trichocarpa]
swissprot
ID Q9FRL5
description Zinc-finger homeodomain protein 5 OS=Arabidopsis thaliana GN=ZHD5 PE=1 SV=1
trembl
ID B9I4V4
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0012s03770g PE=4 SV=2
Gene Ontology
ID GO:0003677
description zinc-finger homeodomain protein 11-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000907_100 0.0 transcription factor TF Family: zf-HD hypothetical protein POPTR_0012s03770g, partial [Populus trichocarpa]
2 Hb_004884_060 0.0938121895 transcription factor TF Family: G2-like PREDICTED: putative Myb family transcription factor At1g14600 [Jatropha curcas]
3 Hb_000155_070 0.1084116617 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
4 Hb_000571_070 0.1150556587 transcription factor TF Family: G2-like PREDICTED: putative Myb family transcription factor At1g14600 [Jatropha curcas]
5 Hb_002301_020 0.1156795623 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
6 Hb_004126_010 0.1224123691 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
7 Hb_003906_110 0.1263640021 - - PREDICTED: molybdenum cofactor sulfurase [Jatropha curcas]
8 Hb_014067_010 0.1264893832 - - hypothetical protein JCGZ_09524 [Jatropha curcas]
9 Hb_006198_050 0.1282786189 - - protein with unknown function [Ricinus communis]
10 Hb_000249_110 0.128520936 - - hypothetical protein JCGZ_22462 [Jatropha curcas]
11 Hb_027751_020 0.1357260385 - - PREDICTED: uncharacterized protein LOC104886652 [Beta vulgaris subsp. vulgaris]
12 Hb_002989_080 0.1380107548 - - hypothetical protein JCGZ_22462 [Jatropha curcas]
13 Hb_103873_010 0.1385048718 - - hypothetical protein POPTR_0008s14260g [Populus trichocarpa]
14 Hb_002038_060 0.1392208229 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC100265010 [Vitis vinifera]
15 Hb_002843_160 0.1398793782 - - PREDICTED: leucine-rich repeat receptor-like protein kinase PEPR1 [Jatropha curcas]
16 Hb_005488_100 0.1414897278 - - hypothetical protein JCGZ_00295 [Jatropha curcas]
17 Hb_010931_100 0.1423818447 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
18 Hb_007178_010 0.1425900116 - - pseudo-hevein [Hevea brasiliensis]
19 Hb_040996_010 0.1474537657 - - PREDICTED: LOW QUALITY PROTEIN: helicase SEN1-like [Jatropha curcas]
20 Hb_000563_540 0.1476068283 - - PREDICTED: Fanconi anemia group I protein [Jatropha curcas]

Gene co-expression network

sample Hb_000907_100 Hb_000907_100 Hb_004884_060 Hb_004884_060 Hb_000907_100--Hb_004884_060 Hb_000155_070 Hb_000155_070 Hb_000907_100--Hb_000155_070 Hb_000571_070 Hb_000571_070 Hb_000907_100--Hb_000571_070 Hb_002301_020 Hb_002301_020 Hb_000907_100--Hb_002301_020 Hb_004126_010 Hb_004126_010 Hb_000907_100--Hb_004126_010 Hb_003906_110 Hb_003906_110 Hb_000907_100--Hb_003906_110 Hb_004884_060--Hb_003906_110 Hb_000249_110 Hb_000249_110 Hb_004884_060--Hb_000249_110 Hb_002989_080 Hb_002989_080 Hb_004884_060--Hb_002989_080 Hb_007178_010 Hb_007178_010 Hb_004884_060--Hb_007178_010 Hb_002843_160 Hb_002843_160 Hb_004884_060--Hb_002843_160 Hb_000914_060 Hb_000914_060 Hb_000155_070--Hb_000914_060 Hb_000155_070--Hb_002301_020 Hb_003327_060 Hb_003327_060 Hb_000155_070--Hb_003327_060 Hb_003627_020 Hb_003627_020 Hb_000155_070--Hb_003627_020 Hb_000155_070--Hb_004126_010 Hb_027751_020 Hb_027751_020 Hb_000571_070--Hb_027751_020 Hb_000563_540 Hb_000563_540 Hb_000571_070--Hb_000563_540 Hb_000264_190 Hb_000264_190 Hb_000571_070--Hb_000264_190 Hb_002609_260 Hb_002609_260 Hb_000571_070--Hb_002609_260 Hb_002301_320 Hb_002301_320 Hb_000571_070--Hb_002301_320 Hb_010931_100 Hb_010931_100 Hb_000571_070--Hb_010931_100 Hb_000442_030 Hb_000442_030 Hb_002301_020--Hb_000442_030 Hb_002301_020--Hb_000563_540 Hb_005488_100 Hb_005488_100 Hb_002301_020--Hb_005488_100 Hb_002301_020--Hb_000571_070 Hb_002301_020--Hb_010931_100 Hb_009510_030 Hb_009510_030 Hb_004126_010--Hb_009510_030 Hb_014067_010 Hb_014067_010 Hb_004126_010--Hb_014067_010 Hb_026048_090 Hb_026048_090 Hb_004126_010--Hb_026048_090 Hb_000057_060 Hb_000057_060 Hb_004126_010--Hb_000057_060 Hb_003001_030 Hb_003001_030 Hb_004126_010--Hb_003001_030 Hb_002506_010 Hb_002506_010 Hb_004126_010--Hb_002506_010 Hb_003906_120 Hb_003906_120 Hb_003906_110--Hb_003906_120 Hb_003906_110--Hb_010931_100 Hb_003906_110--Hb_007178_010 Hb_003906_110--Hb_002989_080 Hb_003906_110--Hb_000249_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
89.4312 0.278137 1.51477 2.09405 72.8562 141.127
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
48.4501 33.3787 89.8626 5.45086 3.5042

CAGE analysis