Hb_000907_130

Information

Type -
Description -
Location Contig907: 166479-171476
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000907_130 0.0 - - -
2 Hb_002835_050 0.0282172681 - - PREDICTED: high-affinity nitrate transporter 3.1-like [Jatropha curcas]
3 Hb_005155_030 0.0662546837 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
4 Hb_097783_030 0.0778684736 - - PREDICTED: probable peroxidase 61 [Jatropha curcas]
5 Hb_003030_050 0.0876226075 - - -
6 Hb_012539_080 0.099353768 - - Polyprotein, putative [Solanum demissum]
7 Hb_043935_010 0.1016394614 - - Receptor protein kinase-like protein [Medicago truncatula]
8 Hb_004896_030 0.1138546398 - - hypothetical protein VITISV_007475 [Vitis vinifera]
9 Hb_114893_010 0.1139294153 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
10 Hb_002740_060 0.1139798212 - - PREDICTED: pectin acetylesterase 12 [Jatropha curcas]
11 Hb_010381_080 0.1153412219 - - cytochrome P450, putative [Ricinus communis]
12 Hb_004392_030 0.1157009621 - - oxidoreductase family protein [Populus trichocarpa]
13 Hb_113379_010 0.1286865789 - - PREDICTED: beta-xylosidase/alpha-L-arabinofuranosidase 1 [Jatropha curcas]
14 Hb_000199_090 0.1349758624 - - Tetrapyrrole-binding family protein [Populus trichocarpa]
15 Hb_039435_020 0.1377620045 - - Lysosomal Pro-X carboxypeptidase, putative [Ricinus communis]
16 Hb_004242_200 0.1389760268 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s44130g [Populus trichocarpa]
17 Hb_000627_110 0.140990779 - - cellulose synthase, putative [Ricinus communis]
18 Hb_027654_010 0.1419124336 - - Isoamyl acetate-hydrolyzing esterase, putative [Ricinus communis]
19 Hb_002122_070 0.1429931141 - - unnamed protein product [Vitis vinifera]
20 Hb_006147_020 0.1433389478 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000907_130 Hb_000907_130 Hb_002835_050 Hb_002835_050 Hb_000907_130--Hb_002835_050 Hb_005155_030 Hb_005155_030 Hb_000907_130--Hb_005155_030 Hb_097783_030 Hb_097783_030 Hb_000907_130--Hb_097783_030 Hb_003030_050 Hb_003030_050 Hb_000907_130--Hb_003030_050 Hb_012539_080 Hb_012539_080 Hb_000907_130--Hb_012539_080 Hb_043935_010 Hb_043935_010 Hb_000907_130--Hb_043935_010 Hb_002835_050--Hb_005155_030 Hb_002835_050--Hb_003030_050 Hb_002835_050--Hb_097783_030 Hb_002835_050--Hb_012539_080 Hb_004392_030 Hb_004392_030 Hb_002835_050--Hb_004392_030 Hb_005155_030--Hb_097783_030 Hb_005155_030--Hb_003030_050 Hb_113379_010 Hb_113379_010 Hb_005155_030--Hb_113379_010 Hb_002740_060 Hb_002740_060 Hb_005155_030--Hb_002740_060 Hb_097783_030--Hb_003030_050 Hb_005622_040 Hb_005622_040 Hb_097783_030--Hb_005622_040 Hb_097783_030--Hb_002740_060 Hb_110737_010 Hb_110737_010 Hb_003030_050--Hb_110737_010 Hb_001369_270 Hb_001369_270 Hb_003030_050--Hb_001369_270 Hb_012539_080--Hb_004392_030 Hb_012539_080--Hb_043935_010 Hb_006147_020 Hb_006147_020 Hb_012539_080--Hb_006147_020 Hb_012539_080--Hb_113379_010 Hb_015817_010 Hb_015817_010 Hb_043935_010--Hb_015817_010 Hb_043935_010--Hb_004392_030 Hb_043935_010--Hb_006147_020 Hb_010381_080 Hb_010381_080 Hb_043935_010--Hb_010381_080 Hb_002659_050 Hb_002659_050 Hb_043935_010--Hb_002659_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.121844 0.113017 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.123064 0.51554

CAGE analysis