Hb_000907_160

Information

Type -
Description -
Location Contig907: 187802-189476
Sequence    

Annotation

kegg
ID rcu:RCOM_0208740
description Tartrate-resistant acid phosphatase type 5 precursor, putative (EC:3.1.3.2)
nr
ID AGL44407.1
description calcineurin-like phosphoesterase [Manihot esculenta]
swissprot
ID Q9SCX8
description Purple acid phosphatase 17 OS=Arabidopsis thaliana GN=PAP17 PE=2 SV=1
trembl
ID V9NC40
description Calcineurin-like phosphoesterase OS=Manihot esculenta GN=PAP17 PE=2 SV=1
Gene Ontology
ID GO:0009986
description purple acid phosphatase 17-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62066: 187837-189582
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000907_160 0.0 - - calcineurin-like phosphoesterase [Manihot esculenta]
2 Hb_003050_020 0.1066374205 - - glycosyl hydrolase family 17 family protein [Populus trichocarpa]
3 Hb_000190_170 0.1238876691 - - PREDICTED: chlorophyllase-1-like [Jatropha curcas]
4 Hb_000003_280 0.1244488226 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003894_050 0.1378425547 - - hypothetical protein JCGZ_14524 [Jatropha curcas]
6 Hb_000959_320 0.1404990183 - - PREDICTED: uncharacterized protein LOC105778325 [Gossypium raimondii]
7 Hb_053264_010 0.1483401337 - - beta glucosidase [Hevea brasiliensis]
8 Hb_002783_100 0.1483978249 - - Zeamatin precursor, putative [Ricinus communis]
9 Hb_006002_050 0.1485344702 - - PREDICTED: uncharacterized protein LOC105638083 [Jatropha curcas]
10 Hb_001047_090 0.1502825628 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP16-like [Jatropha curcas]
11 Hb_010962_020 0.150709924 transcription factor TF Family: OFP hypothetical protein RCOM_0815310 [Ricinus communis]
12 Hb_000920_230 0.1520396147 - - DNA binding protein, putative [Ricinus communis]
13 Hb_002471_130 0.1530912094 - - PREDICTED: probable transmembrane ascorbate ferrireductase 3 [Jatropha curcas]
14 Hb_000140_320 0.1538713355 - - delta-8 sphingolipid desaturase [Vernicia fordii]
15 Hb_000878_050 0.1538853273 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
16 Hb_007811_020 0.1541080649 - - PREDICTED: expansin-A6 [Jatropha curcas]
17 Hb_006846_040 0.1544658851 - - PREDICTED: uncharacterized protein LOC105648687 [Jatropha curcas]
18 Hb_039222_010 0.1545343072 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X1 [Jatropha curcas]
19 Hb_000392_110 0.1548307869 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
20 Hb_000103_450 0.1558577281 - - PREDICTED: dentin sialophosphoprotein-like [Jatropha curcas]

Gene co-expression network

sample Hb_000907_160 Hb_000907_160 Hb_003050_020 Hb_003050_020 Hb_000907_160--Hb_003050_020 Hb_000190_170 Hb_000190_170 Hb_000907_160--Hb_000190_170 Hb_000003_280 Hb_000003_280 Hb_000907_160--Hb_000003_280 Hb_003894_050 Hb_003894_050 Hb_000907_160--Hb_003894_050 Hb_000959_320 Hb_000959_320 Hb_000907_160--Hb_000959_320 Hb_053264_010 Hb_053264_010 Hb_000907_160--Hb_053264_010 Hb_000735_020 Hb_000735_020 Hb_003050_020--Hb_000735_020 Hb_116647_010 Hb_116647_010 Hb_003050_020--Hb_116647_010 Hb_003050_020--Hb_000003_280 Hb_003050_020--Hb_000959_320 Hb_007811_020 Hb_007811_020 Hb_003050_020--Hb_007811_020 Hb_002411_090 Hb_002411_090 Hb_000190_170--Hb_002411_090 Hb_039222_010 Hb_039222_010 Hb_000190_170--Hb_039222_010 Hb_001544_090 Hb_001544_090 Hb_000190_170--Hb_001544_090 Hb_000190_170--Hb_007811_020 Hb_004117_090 Hb_004117_090 Hb_000190_170--Hb_004117_090 Hb_001095_020 Hb_001095_020 Hb_000190_170--Hb_001095_020 Hb_000878_050 Hb_000878_050 Hb_000003_280--Hb_000878_050 Hb_010962_020 Hb_010962_020 Hb_000003_280--Hb_010962_020 Hb_000003_280--Hb_053264_010 Hb_000103_450 Hb_000103_450 Hb_000003_280--Hb_000103_450 Hb_001898_040 Hb_001898_040 Hb_000003_280--Hb_001898_040 Hb_006846_040 Hb_006846_040 Hb_000003_280--Hb_006846_040 Hb_003544_080 Hb_003544_080 Hb_003894_050--Hb_003544_080 Hb_002783_100 Hb_002783_100 Hb_003894_050--Hb_002783_100 Hb_003894_050--Hb_001898_040 Hb_001663_060 Hb_001663_060 Hb_003894_050--Hb_001663_060 Hb_001136_160 Hb_001136_160 Hb_003894_050--Hb_001136_160 Hb_003583_010 Hb_003583_010 Hb_000959_320--Hb_003583_010 Hb_000920_230 Hb_000920_230 Hb_000959_320--Hb_000920_230 Hb_000103_070 Hb_000103_070 Hb_000959_320--Hb_000103_070 Hb_000003_210 Hb_000003_210 Hb_000959_320--Hb_000003_210 Hb_000903_040 Hb_000903_040 Hb_053264_010--Hb_000903_040 Hb_053264_010--Hb_006846_040 Hb_053264_010--Hb_000103_450 Hb_053264_010--Hb_010962_020 Hb_001047_090 Hb_001047_090 Hb_053264_010--Hb_001047_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.286069 2.53601 5.87269 0.0209818 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.38299 0.0753083 0 0.226893 2.16377

CAGE analysis