Hb_000907_170

Information

Type -
Description -
Location Contig907: 190326-191468
Sequence    

Annotation

kegg
ID rcu:RCOM_0458060
description leucine-rich repeat-containing protein, putative
nr
ID XP_002531928.1
description leucine-rich repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q40392
description TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1
trembl
ID B9T115
description Leucine-rich repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0458060 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000907_170 0.0 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
2 Hb_002609_060 0.0780402576 - - PREDICTED: sugar transport protein 8-like [Jatropha curcas]
3 Hb_145084_010 0.1314352808 - - PREDICTED: uncharacterized protein LOC105646270 [Jatropha curcas]
4 Hb_000742_110 0.1346749233 - - hypothetical protein JCGZ_09215 [Jatropha curcas]
5 Hb_002138_010 0.1460214914 - - hypothetical protein POPTR_0001s30620g [Populus trichocarpa]
6 Hb_010560_040 0.1472738406 - - PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Jatropha curcas]
7 Hb_003097_210 0.1557950063 - - PREDICTED: uncharacterized protein LOC105631194 isoform X1 [Jatropha curcas]
8 Hb_002719_080 0.1566781643 - - hypothetical protein POPTR_0006s27920g [Populus trichocarpa]
9 Hb_001700_020 0.1610087183 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]
10 Hb_000616_040 0.1654091196 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
11 Hb_000363_200 0.1678822121 - - 40S ribosomal protein S8, putative [Ricinus communis]
12 Hb_000599_350 0.1716196527 - - PREDICTED: glutathione gamma-glutamylcysteinyltransferase 1 [Jatropha curcas]
13 Hb_002835_100 0.1722536623 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 6-like [Jatropha curcas]
14 Hb_116898_010 0.1726043698 - - PREDICTED: uncharacterized protein LOC105639569 isoform X2 [Jatropha curcas]
15 Hb_000648_020 0.1741082551 - - PREDICTED: chaperone protein dnaJ 10-like [Jatropha curcas]
16 Hb_004208_130 0.175188784 - - hypothetical protein JCGZ_16532 [Jatropha curcas]
17 Hb_155764_010 0.1771508258 - - -
18 Hb_001016_090 0.1785301986 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Populus euphratica]
19 Hb_005052_020 0.180741823 - - -
20 Hb_002272_090 0.1808805297 - - RING/U-box superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_000907_170 Hb_000907_170 Hb_002609_060 Hb_002609_060 Hb_000907_170--Hb_002609_060 Hb_145084_010 Hb_145084_010 Hb_000907_170--Hb_145084_010 Hb_000742_110 Hb_000742_110 Hb_000907_170--Hb_000742_110 Hb_002138_010 Hb_002138_010 Hb_000907_170--Hb_002138_010 Hb_010560_040 Hb_010560_040 Hb_000907_170--Hb_010560_040 Hb_003097_210 Hb_003097_210 Hb_000907_170--Hb_003097_210 Hb_002609_060--Hb_145084_010 Hb_002609_060--Hb_000742_110 Hb_002609_060--Hb_010560_040 Hb_000363_200 Hb_000363_200 Hb_002609_060--Hb_000363_200 Hb_002719_080 Hb_002719_080 Hb_002609_060--Hb_002719_080 Hb_145084_010--Hb_000363_200 Hb_001863_090 Hb_001863_090 Hb_145084_010--Hb_001863_090 Hb_145084_010--Hb_003097_210 Hb_001016_090 Hb_001016_090 Hb_145084_010--Hb_001016_090 Hb_000742_110--Hb_010560_040 Hb_000742_110--Hb_003097_210 Hb_181600_010 Hb_181600_010 Hb_000742_110--Hb_181600_010 Hb_155764_010 Hb_155764_010 Hb_000742_110--Hb_155764_010 Hb_000865_070 Hb_000865_070 Hb_000742_110--Hb_000865_070 Hb_048476_050 Hb_048476_050 Hb_000742_110--Hb_048476_050 Hb_002374_400 Hb_002374_400 Hb_002138_010--Hb_002374_400 Hb_000003_270 Hb_000003_270 Hb_002138_010--Hb_000003_270 Hb_001832_120 Hb_001832_120 Hb_002138_010--Hb_001832_120 Hb_002138_010--Hb_000742_110 Hb_007181_070 Hb_007181_070 Hb_002138_010--Hb_007181_070 Hb_003209_200 Hb_003209_200 Hb_002138_010--Hb_003209_200 Hb_010560_040--Hb_003097_210 Hb_010560_040--Hb_000865_070 Hb_010560_040--Hb_155764_010 Hb_010560_040--Hb_048476_050 Hb_001427_230 Hb_001427_230 Hb_010560_040--Hb_001427_230 Hb_003097_210--Hb_155764_010 Hb_001688_020 Hb_001688_020 Hb_003097_210--Hb_001688_020 Hb_003226_280 Hb_003226_280 Hb_003097_210--Hb_003226_280 Hb_003097_210--Hb_000363_200 Hb_003097_210--Hb_000865_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.526435 0.679571 0.0437682 0.359121 0.501201 1.62676
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.45186 3.72187 2.82512 3.01181 0.349136

CAGE analysis