Hb_000907_190

Information

Type -
Description -
Location Contig907: 198397-201370
Sequence    

Annotation

kegg
ID pop:POPTR_0015s05530g
description hypothetical protein
nr
ID XP_012081286.1
description PREDICTED: uncharacterized protein At4g15970-like [Jatropha curcas]
swissprot
ID P0C042
description Uncharacterized protein At4g15970 OS=Arabidopsis thaliana GN=At4g15970 PE=2 SV=1
trembl
ID A0A067K1U3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18400 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62068: 198910-199164 , PASA_asmbl_62069: 199673-201424
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000907_190 0.0 - - PREDICTED: uncharacterized protein At4g15970-like [Jatropha curcas]
2 Hb_003968_020 0.0929796077 - - PREDICTED: limonoid UDP-glucosyltransferase-like [Glycine max]
3 Hb_023080_010 0.1004188621 - - PREDICTED: probable serine incorporator [Jatropha curcas]
4 Hb_006620_040 0.1013307197 - - PREDICTED: probable 6-phosphogluconolactonase 1 [Jatropha curcas]
5 Hb_004190_010 0.1093920445 - - unnamed protein product [Vitis vinifera]
6 Hb_000076_200 0.1185151861 - - conserved hypothetical protein [Ricinus communis]
7 Hb_012660_010 0.119865901 - - hypothetical protein JCGZ_25971 [Jatropha curcas]
8 Hb_011486_030 0.1211611828 - - branched-chain amino acid aminotransferase, putative [Ricinus communis]
9 Hb_000161_250 0.1322366586 transcription factor TF Family: Tify conserved hypothetical protein [Ricinus communis]
10 Hb_001288_010 0.1337201872 - - -
11 Hb_020332_040 0.1360590494 - - PREDICTED: alcohol dehydrogenase 1-like [Jatropha curcas]
12 Hb_000683_010 0.1392932085 - - Interleukin-1 receptor-associated kinase, putative [Ricinus communis]
13 Hb_000281_200 0.1425135087 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
14 Hb_001442_080 0.143033642 transcription factor TF Family: MYB-related transcription factor MYB251 [Fagus crenata]
15 Hb_023732_020 0.1449665774 - - PREDICTED: fatty acyl-CoA reductase 3-like [Jatropha curcas]
16 Hb_039562_010 0.1452212522 - - PREDICTED: protein SRG1-like [Jatropha curcas]
17 Hb_000301_030 0.1468031995 - - PREDICTED: pectate lyase-like [Jatropha curcas]
18 Hb_027141_010 0.1476519212 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
19 Hb_000135_050 0.1486577883 - - PREDICTED: putative leucine-rich repeat receptor-like protein kinase At2g19210-like isoform X2 [Citrus sinensis]
20 Hb_178389_020 0.1521443975 - - PREDICTED: cytochrome P450 86B1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000907_190 Hb_000907_190 Hb_003968_020 Hb_003968_020 Hb_000907_190--Hb_003968_020 Hb_023080_010 Hb_023080_010 Hb_000907_190--Hb_023080_010 Hb_006620_040 Hb_006620_040 Hb_000907_190--Hb_006620_040 Hb_004190_010 Hb_004190_010 Hb_000907_190--Hb_004190_010 Hb_000076_200 Hb_000076_200 Hb_000907_190--Hb_000076_200 Hb_012660_010 Hb_012660_010 Hb_000907_190--Hb_012660_010 Hb_003968_020--Hb_000076_200 Hb_003968_020--Hb_023080_010 Hb_003968_020--Hb_006620_040 Hb_039562_010 Hb_039562_010 Hb_003968_020--Hb_039562_010 Hb_000281_200 Hb_000281_200 Hb_003968_020--Hb_000281_200 Hb_001288_010 Hb_001288_010 Hb_003968_020--Hb_001288_010 Hb_023732_020 Hb_023732_020 Hb_023080_010--Hb_023732_020 Hb_003073_020 Hb_003073_020 Hb_023080_010--Hb_003073_020 Hb_032717_030 Hb_032717_030 Hb_023080_010--Hb_032717_030 Hb_023080_010--Hb_039562_010 Hb_023080_010--Hb_006620_040 Hb_006620_040--Hb_039562_010 Hb_000466_090 Hb_000466_090 Hb_006620_040--Hb_000466_090 Hb_003189_030 Hb_003189_030 Hb_006620_040--Hb_003189_030 Hb_004200_040 Hb_004200_040 Hb_004190_010--Hb_004200_040 Hb_000140_260 Hb_000140_260 Hb_004190_010--Hb_000140_260 Hb_003900_050 Hb_003900_050 Hb_004190_010--Hb_003900_050 Hb_004190_010--Hb_012660_010 Hb_004463_040 Hb_004463_040 Hb_004190_010--Hb_004463_040 Hb_007532_050 Hb_007532_050 Hb_000076_200--Hb_007532_050 Hb_004037_010 Hb_004037_010 Hb_000076_200--Hb_004037_010 Hb_005356_010 Hb_005356_010 Hb_000076_200--Hb_005356_010 Hb_000161_250 Hb_000161_250 Hb_000076_200--Hb_000161_250 Hb_007527_020 Hb_007527_020 Hb_000076_200--Hb_007527_020 Hb_020332_040 Hb_020332_040 Hb_012660_010--Hb_020332_040 Hb_107258_010 Hb_107258_010 Hb_012660_010--Hb_107258_010 Hb_011486_030 Hb_011486_030 Hb_012660_010--Hb_011486_030 Hb_012660_010--Hb_001288_010 Hb_001863_290 Hb_001863_290 Hb_012660_010--Hb_001863_290 Hb_000301_030 Hb_000301_030 Hb_012660_010--Hb_000301_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.119809 0 0.124003 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.96628 0.140501

CAGE analysis