Hb_000908_010

Information

Type -
Description -
Location Contig908: 1-273
Sequence    

Annotation

kegg
ID rcu:RCOM_1118640
description Disease resistance protein RGA2, putative (EC:3.1.3.16)
nr
ID XP_002525331.1
description Disease resistance protein RGA2, putative [Ricinus communis]
swissprot
ID Q9LRR4
description Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1
trembl
ID B9SH62
description Disease resistance protein RGA2, putative OS=Ricinus communis GN=RCOM_1118640 PE=4 SV=1
Gene Ontology
ID GO:0004721
description disease resistance rpp13-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000908_010 0.0 - - Disease resistance protein RGA2, putative [Ricinus communis]
2 Hb_001545_230 0.2434143126 - - Nonspecific lipid-transfer protein A, putative [Ricinus communis]
3 Hb_008983_060 0.2546037557 desease resistance Gene Name: NB-ARC NB-ARC domain-containing disease resistance protein, putative [Theobroma cacao]
4 Hb_000107_320 0.276835402 - - hypothetical protein POPTR_0004s21930g [Populus trichocarpa]
5 Hb_030827_050 0.2880232497 - - hypothetical protein CISIN_1g040641mg, partial [Citrus sinensis]
6 Hb_003947_010 0.3091136024 - - hypothetical protein JCGZ_24829 [Jatropha curcas]
7 Hb_001999_190 0.3092637071 - - GDP-mannose transporter, putative [Ricinus communis]
8 Hb_000594_170 0.3128539066 - - -
9 Hb_000402_010 0.3245670363 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 6 [Jatropha curcas]
10 Hb_018616_030 0.3455488115 - - hypothetical protein B456_008G198600 [Gossypium raimondii]
11 Hb_005975_020 0.3501545845 - - -
12 Hb_000315_030 0.3534452306 - - carbohydrate binding protein, putative [Ricinus communis]
13 Hb_000295_010 0.3541539296 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_000061_380 0.356823163 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001140_340 0.3712034326 - - -
16 Hb_009012_010 0.3783822688 - - -
17 Hb_000097_040 0.3810597304 transcription factor TF Family: MYB myb domain protein [Hevea brasiliensis]
18 Hb_011344_080 0.383188392 - - -
19 Hb_007481_020 0.3853797325 - - -
20 Hb_000152_020 0.3872805248 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH118-like [Jatropha curcas]

Gene co-expression network

sample Hb_000908_010 Hb_000908_010 Hb_001545_230 Hb_001545_230 Hb_000908_010--Hb_001545_230 Hb_008983_060 Hb_008983_060 Hb_000908_010--Hb_008983_060 Hb_000107_320 Hb_000107_320 Hb_000908_010--Hb_000107_320 Hb_030827_050 Hb_030827_050 Hb_000908_010--Hb_030827_050 Hb_003947_010 Hb_003947_010 Hb_000908_010--Hb_003947_010 Hb_001999_190 Hb_001999_190 Hb_000908_010--Hb_001999_190 Hb_001617_030 Hb_001617_030 Hb_001545_230--Hb_001617_030 Hb_001514_080 Hb_001514_080 Hb_001545_230--Hb_001514_080 Hb_005085_010 Hb_005085_010 Hb_001545_230--Hb_005085_010 Hb_000010_120 Hb_000010_120 Hb_001545_230--Hb_000010_120 Hb_002325_020 Hb_002325_020 Hb_001545_230--Hb_002325_020 Hb_008983_060--Hb_001999_190 Hb_184705_010 Hb_184705_010 Hb_008983_060--Hb_184705_010 Hb_001148_020 Hb_001148_020 Hb_008983_060--Hb_001148_020 Hb_001491_060 Hb_001491_060 Hb_008983_060--Hb_001491_060 Hb_000061_380 Hb_000061_380 Hb_008983_060--Hb_000061_380 Hb_005975_020 Hb_005975_020 Hb_000107_320--Hb_005975_020 Hb_000107_320--Hb_001999_190 Hb_009012_010 Hb_009012_010 Hb_000107_320--Hb_009012_010 Hb_015388_030 Hb_015388_030 Hb_000107_320--Hb_015388_030 Hb_012753_080 Hb_012753_080 Hb_000107_320--Hb_012753_080 Hb_151497_010 Hb_151497_010 Hb_030827_050--Hb_151497_010 Hb_007101_220 Hb_007101_220 Hb_030827_050--Hb_007101_220 Hb_006810_070 Hb_006810_070 Hb_030827_050--Hb_006810_070 Hb_030827_050--Hb_001545_230 Hb_118346_010 Hb_118346_010 Hb_030827_050--Hb_118346_010 Hb_000329_640 Hb_000329_640 Hb_003947_010--Hb_000329_640 Hb_001140_340 Hb_001140_340 Hb_003947_010--Hb_001140_340 Hb_012702_030 Hb_012702_030 Hb_003947_010--Hb_012702_030 Hb_029475_010 Hb_029475_010 Hb_003947_010--Hb_029475_010 Hb_002760_030 Hb_002760_030 Hb_003947_010--Hb_002760_030 Hb_006711_050 Hb_006711_050 Hb_003947_010--Hb_006711_050 Hb_001999_190--Hb_001491_060 Hb_001999_190--Hb_184705_010 Hb_001999_190--Hb_001148_020 Hb_001999_190--Hb_005975_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.587789 0.498005 0 0 0.425073 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.24279 0

CAGE analysis