Hb_000912_100

Information

Type -
Description -
Location Contig912: 139815-149545
Sequence    

Annotation

kegg
ID tcc:TCM_021551
description Nucleotide-sugar transporter family protein isoform 1
nr
ID XP_010930917.1
description PREDICTED: CMP-sialic acid transporter 3-like isoform X2 [Elaeis guineensis]
swissprot
ID Q8GY97
description CMP-sialic acid transporter 2 OS=Arabidopsis thaliana GN=At2g43240 PE=2 SV=1
trembl
ID A0A067LFG1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23776 PE=4 SV=1
Gene Ontology
ID GO:0016020
description cmp-sialic acid transporter 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62156: 139749-149361 , PASA_asmbl_62157: 146588-146920
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000912_100 0.0 - - PREDICTED: CMP-sialic acid transporter 3-like isoform X2 [Elaeis guineensis]
2 Hb_001691_040 0.081253803 - - PREDICTED: uncharacterized protein LOC105649546 isoform X2 [Jatropha curcas]
3 Hb_002217_090 0.0832357797 - - PREDICTED: probable protein phosphatase 2C 13 [Jatropha curcas]
4 Hb_000417_300 0.0873319245 - - PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7 [Jatropha curcas]
5 Hb_003975_010 0.0906771909 - - PREDICTED: protein RTF2 homolog [Jatropha curcas]
6 Hb_002046_060 0.0960390254 - - PREDICTED: beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase [Jatropha curcas]
7 Hb_002876_210 0.0962458745 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Jatropha curcas]
8 Hb_003599_030 0.0977791304 - - PREDICTED: glucan endo-1,3-beta-glucosidase 4 isoform X3 [Jatropha curcas]
9 Hb_004128_030 0.0983042394 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 8-like isoform X1 [Jatropha curcas]
10 Hb_004375_110 0.1017586803 - - PREDICTED: probable ATP-dependent RNA helicase DHX37 [Jatropha curcas]
11 Hb_017948_030 0.102065344 - - PREDICTED: uncharacterized protein LOC105639493 [Jatropha curcas]
12 Hb_000012_240 0.1033508674 - - PREDICTED: ferrochelatase-2, chloroplastic [Jatropha curcas]
13 Hb_009372_020 0.1056035245 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
14 Hb_001500_030 0.1068409216 - - PREDICTED: uncharacterized protein At2g33490 isoform X2 [Jatropha curcas]
15 Hb_023344_110 0.1085286618 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 [Jatropha curcas]
16 Hb_000656_390 0.1104408334 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]
17 Hb_000340_080 0.1126471267 - - PREDICTED: isoamylase 2, chloroplastic [Jatropha curcas]
18 Hb_143766_030 0.1135207369 - - protein with unknown function [Ricinus communis]
19 Hb_000110_300 0.1137601338 - - PREDICTED: uncharacterized protein LOC105642013 [Jatropha curcas]
20 Hb_023344_150 0.1141613526 - - PREDICTED: uncharacterized protein LOC105644462 [Jatropha curcas]

Gene co-expression network

sample Hb_000912_100 Hb_000912_100 Hb_001691_040 Hb_001691_040 Hb_000912_100--Hb_001691_040 Hb_002217_090 Hb_002217_090 Hb_000912_100--Hb_002217_090 Hb_000417_300 Hb_000417_300 Hb_000912_100--Hb_000417_300 Hb_003975_010 Hb_003975_010 Hb_000912_100--Hb_003975_010 Hb_002046_060 Hb_002046_060 Hb_000912_100--Hb_002046_060 Hb_002876_210 Hb_002876_210 Hb_000912_100--Hb_002876_210 Hb_001691_040--Hb_003975_010 Hb_002272_240 Hb_002272_240 Hb_001691_040--Hb_002272_240 Hb_001754_020 Hb_001754_020 Hb_001691_040--Hb_001754_020 Hb_000395_040 Hb_000395_040 Hb_001691_040--Hb_000395_040 Hb_001691_040--Hb_002876_210 Hb_001500_030 Hb_001500_030 Hb_002217_090--Hb_001500_030 Hb_004128_030 Hb_004128_030 Hb_002217_090--Hb_004128_030 Hb_003747_210 Hb_003747_210 Hb_002217_090--Hb_003747_210 Hb_000711_010 Hb_000711_010 Hb_002217_090--Hb_000711_010 Hb_002217_090--Hb_002876_210 Hb_000656_390 Hb_000656_390 Hb_000417_300--Hb_000656_390 Hb_000417_300--Hb_002876_210 Hb_000417_300--Hb_004128_030 Hb_004375_110 Hb_004375_110 Hb_000417_300--Hb_004375_110 Hb_009288_010 Hb_009288_010 Hb_000417_300--Hb_009288_010 Hb_005192_010 Hb_005192_010 Hb_003975_010--Hb_005192_010 Hb_003975_010--Hb_001754_020 Hb_003975_010--Hb_002046_060 Hb_009252_030 Hb_009252_030 Hb_003975_010--Hb_009252_030 Hb_001699_170 Hb_001699_170 Hb_002046_060--Hb_001699_170 Hb_002349_030 Hb_002349_030 Hb_002046_060--Hb_002349_030 Hb_006469_070 Hb_006469_070 Hb_002046_060--Hb_006469_070 Hb_000012_240 Hb_000012_240 Hb_002046_060--Hb_000012_240 Hb_002965_050 Hb_002965_050 Hb_002876_210--Hb_002965_050 Hb_002900_120 Hb_002900_120 Hb_002876_210--Hb_002900_120 Hb_002876_210--Hb_000711_010 Hb_000815_310 Hb_000815_310 Hb_002876_210--Hb_000815_310 Hb_000452_030 Hb_000452_030 Hb_002876_210--Hb_000452_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.10743 14.9681 7.68854 17.027 3.59549 3.39099
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.22117 4.90563 5.6234 6.24762 9.10788

CAGE analysis