Hb_000913_040

Information

Type -
Description -
Location Contig913: 82654-83357
Sequence    

Annotation

kegg
ID tcc:TCM_042267
description Methyltransferase-related protein, putative
nr
ID XP_007017049.1
description Methyltransferase-related protein, putative [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061GYY4
description Methyltransferase-related protein, putative OS=Theobroma cacao GN=TCM_042267 PE=4 SV=1
Gene Ontology
ID GO:0016023
description methyltransferase-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62168: 82723-83302
cDNA
(Sanger)
(ID:Location)		 017_E23.ab1: 82769-83302 , 021_L10.ab1: 82769-83302

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000913_040 0.0 - - Methyltransferase-related protein, putative [Theobroma cacao]
2 Hb_000580_100 0.1077002631 - - PREDICTED: uncharacterized protein LOC105643133 isoform X1 [Jatropha curcas]
3 Hb_000953_130 0.1176246632 - - PREDICTED: fructose-bisphosphate aldolase cytoplasmic isozyme [Jatropha curcas]
4 Hb_000116_560 0.1196290866 - - PREDICTED: serine/threonine-protein phosphatase 7 [Jatropha curcas]
5 Hb_007390_020 0.124383885 - - PREDICTED: protein FMP32, mitochondrial-like [Populus euphratica]
6 Hb_011671_480 0.1263152497 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001584_260 0.1270869641 - - zinc finger protein, putative [Ricinus communis]
8 Hb_004449_180 0.1279995965 - - PREDICTED: SAC3 family protein 1 [Jatropha curcas]
9 Hb_000538_240 0.1291216068 - - PREDICTED: uncharacterized protein LOC105643073 [Jatropha curcas]
10 Hb_000152_600 0.1292169501 - - PREDICTED: protein jagunal homolog 1 [Jatropha curcas]
11 Hb_000165_080 0.1301314328 - - PREDICTED: multiple inositol polyphosphate phosphatase 1 isoform X1 [Jatropha curcas]
12 Hb_004567_010 0.1305865453 - - PREDICTED: ER lumen protein-retaining receptor [Jatropha curcas]
13 Hb_001633_080 0.1356868246 - - PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
14 Hb_004055_050 0.1361956927 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
15 Hb_124373_010 0.136373111 - - PREDICTED: BRCA1-A complex subunit BRE isoform X1 [Jatropha curcas]
16 Hb_002042_150 0.1372332071 - - PREDICTED: signal peptidase complex subunit 3B [Jatropha curcas]
17 Hb_005535_080 0.1373514588 - - hypothetical protein CICLE_v10012766mg [Citrus clementina]
18 Hb_004357_050 0.1375552827 - - PREDICTED: histone deacetylase HDT1-like [Jatropha curcas]
19 Hb_001825_040 0.1390444148 - - myosin XI, putative [Ricinus communis]
20 Hb_007850_030 0.1397722859 - - PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]

Gene co-expression network

sample Hb_000913_040 Hb_000913_040 Hb_000580_100 Hb_000580_100 Hb_000913_040--Hb_000580_100 Hb_000953_130 Hb_000953_130 Hb_000913_040--Hb_000953_130 Hb_000116_560 Hb_000116_560 Hb_000913_040--Hb_000116_560 Hb_007390_020 Hb_007390_020 Hb_000913_040--Hb_007390_020 Hb_011671_480 Hb_011671_480 Hb_000913_040--Hb_011671_480 Hb_001584_260 Hb_001584_260 Hb_000913_040--Hb_001584_260 Hb_039021_010 Hb_039021_010 Hb_000580_100--Hb_039021_010 Hb_005245_120 Hb_005245_120 Hb_000580_100--Hb_005245_120 Hb_000622_200 Hb_000622_200 Hb_000580_100--Hb_000622_200 Hb_004117_190 Hb_004117_190 Hb_000580_100--Hb_004117_190 Hb_004079_130 Hb_004079_130 Hb_000580_100--Hb_004079_130 Hb_007926_050 Hb_007926_050 Hb_000953_130--Hb_007926_050 Hb_000748_030 Hb_000748_030 Hb_000953_130--Hb_000748_030 Hb_000384_070 Hb_000384_070 Hb_000953_130--Hb_000384_070 Hb_019181_030 Hb_019181_030 Hb_000953_130--Hb_019181_030 Hb_005993_010 Hb_005993_010 Hb_000953_130--Hb_005993_010 Hb_018845_010 Hb_018845_010 Hb_000116_560--Hb_018845_010 Hb_177994_010 Hb_177994_010 Hb_000116_560--Hb_177994_010 Hb_011671_120 Hb_011671_120 Hb_000116_560--Hb_011671_120 Hb_000375_300 Hb_000375_300 Hb_000116_560--Hb_000375_300 Hb_081599_010 Hb_081599_010 Hb_000116_560--Hb_081599_010 Hb_007390_020--Hb_019181_030 Hb_000152_600 Hb_000152_600 Hb_007390_020--Hb_000152_600 Hb_005054_220 Hb_005054_220 Hb_007390_020--Hb_005054_220 Hb_004176_070 Hb_004176_070 Hb_007390_020--Hb_004176_070 Hb_010368_050 Hb_010368_050 Hb_007390_020--Hb_010368_050 Hb_001829_040 Hb_001829_040 Hb_011671_480--Hb_001829_040 Hb_000538_240 Hb_000538_240 Hb_011671_480--Hb_000538_240 Hb_001911_040 Hb_001911_040 Hb_011671_480--Hb_001911_040 Hb_000260_720 Hb_000260_720 Hb_011671_480--Hb_000260_720 Hb_002983_080 Hb_002983_080 Hb_011671_480--Hb_002983_080 Hb_000331_090 Hb_000331_090 Hb_011671_480--Hb_000331_090 Hb_001584_260--Hb_039021_010 Hb_001584_260--Hb_000580_100 Hb_001825_040 Hb_001825_040 Hb_001584_260--Hb_001825_040 Hb_001482_050 Hb_001482_050 Hb_001584_260--Hb_001482_050 Hb_007850_030 Hb_007850_030 Hb_001584_260--Hb_007850_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.0947 30.2674 52.9654 105.021 23.3 20.8823
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.2598 58.3541 17.67 48.4945 19.2584

CAGE analysis