Hb_000914_060

Information

Type transcription factor
Description TF Family: AP2
Location Contig914: 76795-79680
Sequence    

Annotation

kegg
ID pop:POPTR_0003s20470g
description POPTRDRAFT_758079; ovule development family protein
nr
ID XP_011042075.1
description PREDICTED: AP2-like ethylene-responsive transcription factor PLT1 [Populus euphratica]
swissprot
ID Q5YGP7
description AP2-like ethylene-responsive transcription factor PLT2 OS=Arabidopsis thaliana GN=PLT2 PE=2 SV=1
trembl
ID B9GW95
description Ovule development family protein OS=Populus trichocarpa GN=POPTR_0003s20470g PE=4 SV=1
Gene Ontology
ID GO:0005634
description ap2-like ethylene-responsive transcription factor plt2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000914_060 0.0 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor PLT1 [Populus euphratica]
2 Hb_003327_060 0.0888290413 - - PREDICTED: uncharacterized protein LOC105645303 isoform X1 [Jatropha curcas]
3 Hb_000155_070 0.0906771416 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
4 Hb_000603_200 0.1399233653 - - PREDICTED: myosin-15 [Jatropha curcas]
5 Hb_003627_020 0.1408037094 - - PREDICTED: probable calcium-binding protein CML49 [Jatropha curcas]
6 Hb_000061_410 0.1445989689 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
7 Hb_001892_150 0.1448187706 - - -
8 Hb_004968_060 0.1500441493 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002301_020 0.1501125394 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
10 Hb_001252_160 0.1502315342 - - PREDICTED: PRA1 family protein A3 [Jatropha curcas]
11 Hb_138413_010 0.152736803 - - hypothetical protein JCGZ_09524 [Jatropha curcas]
12 Hb_003507_020 0.1561819881 - - PREDICTED: uncharacterized protein LOC105641595 [Jatropha curcas]
13 Hb_005730_020 0.1576809973 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.1-like [Jatropha curcas]
14 Hb_077562_040 0.1577469747 - - hypothetical protein JCGZ_24573 [Jatropha curcas]
15 Hb_027445_060 0.1599538185 - - PREDICTED: pescadillo homolog isoform X1 [Jatropha curcas]
16 Hb_002989_080 0.163549728 - - hypothetical protein JCGZ_22462 [Jatropha curcas]
17 Hb_000329_610 0.1655994212 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003786_110 0.1665179241 - - PREDICTED: uncharacterized protein LOC105639617 [Jatropha curcas]
19 Hb_013479_020 0.1668179442 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
20 Hb_000933_140 0.1691791585 - - PREDICTED: uncharacterized protein LOC105630501 [Jatropha curcas]

Gene co-expression network

sample Hb_000914_060 Hb_000914_060 Hb_003327_060 Hb_003327_060 Hb_000914_060--Hb_003327_060 Hb_000155_070 Hb_000155_070 Hb_000914_060--Hb_000155_070 Hb_000603_200 Hb_000603_200 Hb_000914_060--Hb_000603_200 Hb_003627_020 Hb_003627_020 Hb_000914_060--Hb_003627_020 Hb_000061_410 Hb_000061_410 Hb_000914_060--Hb_000061_410 Hb_001892_150 Hb_001892_150 Hb_000914_060--Hb_001892_150 Hb_138413_010 Hb_138413_010 Hb_003327_060--Hb_138413_010 Hb_003327_060--Hb_000155_070 Hb_000933_140 Hb_000933_140 Hb_003327_060--Hb_000933_140 Hb_004968_060 Hb_004968_060 Hb_003327_060--Hb_004968_060 Hb_005730_020 Hb_005730_020 Hb_003327_060--Hb_005730_020 Hb_002301_020 Hb_002301_020 Hb_000155_070--Hb_002301_020 Hb_000155_070--Hb_003627_020 Hb_000907_100 Hb_000907_100 Hb_000155_070--Hb_000907_100 Hb_004126_010 Hb_004126_010 Hb_000155_070--Hb_004126_010 Hb_000483_370 Hb_000483_370 Hb_000603_200--Hb_000483_370 Hb_001252_160 Hb_001252_160 Hb_000603_200--Hb_001252_160 Hb_002989_080 Hb_002989_080 Hb_000603_200--Hb_002989_080 Hb_003507_020 Hb_003507_020 Hb_000603_200--Hb_003507_020 Hb_043637_010 Hb_043637_010 Hb_000603_200--Hb_043637_010 Hb_007178_010 Hb_007178_010 Hb_000603_200--Hb_007178_010 Hb_003627_020--Hb_004126_010 Hb_003627_020--Hb_003507_020 Hb_003656_030 Hb_003656_030 Hb_003627_020--Hb_003656_030 Hb_003627_020--Hb_007178_010 Hb_005488_070 Hb_005488_070 Hb_003627_020--Hb_005488_070 Hb_009510_030 Hb_009510_030 Hb_003627_020--Hb_009510_030 Hb_000061_410--Hb_001252_160 Hb_000061_410--Hb_000155_070 Hb_000061_410--Hb_003627_020 Hb_000061_410--Hb_003507_020 Hb_064201_010 Hb_064201_010 Hb_000061_410--Hb_064201_010 Hb_029464_010 Hb_029464_010 Hb_000061_410--Hb_029464_010 Hb_043061_010 Hb_043061_010 Hb_001892_150--Hb_043061_010 Hb_005450_010 Hb_005450_010 Hb_001892_150--Hb_005450_010 Hb_029879_080 Hb_029879_080 Hb_001892_150--Hb_029879_080 Hb_001892_150--Hb_003327_060 Hb_115919_020 Hb_115919_020 Hb_001892_150--Hb_115919_020 Hb_134789_010 Hb_134789_010 Hb_001892_150--Hb_134789_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.63 0.671696 0.038783 0.0230192 31.3322 64.5489
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.3433 28.6706 16.9552 1.82258 0

CAGE analysis