Hb_000914_090

Information

Type -
Description -
Location Contig914: 89520-90308
Sequence    

Annotation

kegg
ID rcu:RCOM_1577350
description hypothetical protein
nr
ID XP_012089970.1
description PREDICTED: uncharacterized protein LOC105648257 [Jatropha curcas]
swissprot
ID Q2RYF4
description Cytochrome c-type biogenesis protein CcmE OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIB 8255 / S1) GN=ccmE PE=3 SV=1
trembl
ID A0A067JPZ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25901 PE=3 SV=1
Gene Ontology
ID GO:0005743
description transmembrane protein g1p-related 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 032_H21.ab1: 89600-90396 , 041_G18.ab1: 89668-90396

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000914_090 0.0 - - PREDICTED: uncharacterized protein LOC105648257 [Jatropha curcas]
2 Hb_001205_070 0.1339348432 - - PREDICTED: vam6/Vps39-like protein [Jatropha curcas]
3 Hb_000879_010 0.1339761793 - - PREDICTED: uncharacterized protein LOC105630824 [Jatropha curcas]
4 Hb_000196_050 0.1391258633 - - hypothetical protein JCGZ_20265 [Jatropha curcas]
5 Hb_002811_230 0.1394112964 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-1 [Jatropha curcas]
6 Hb_002909_070 0.1394652595 - - hypothetical protein POPTR_0006s03000g [Populus trichocarpa]
7 Hb_006582_020 0.1399877519 - - Zinc finger protein ZFPM1 [Theobroma cacao]
8 Hb_000009_460 0.1424518176 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005551_050 0.1443369278 - - PREDICTED: nudix hydrolase 27, chloroplastic [Jatropha curcas]
10 Hb_000363_140 0.1452480425 - - hypothetical protein CICLE_v10009052mg [Citrus clementina]
11 Hb_002182_060 0.1452866085 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATXR6 [Jatropha curcas]
12 Hb_001565_080 0.1466748818 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM17-2-like [Jatropha curcas]
13 Hb_004994_140 0.1482882265 - - PREDICTED: digalactosyldiacylglycerol synthase 2, chloroplastic [Jatropha curcas]
14 Hb_001159_110 0.1494747467 - - PREDICTED: uncharacterized protein At4g22758 [Jatropha curcas]
15 Hb_000215_060 0.1500485817 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM17-2-like [Jatropha curcas]
16 Hb_003683_040 0.1502692612 - - unnamed protein product [Coffea canephora]
17 Hb_000264_090 0.1507619366 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
18 Hb_002798_050 0.1509144239 - - l-allo-threonine aldolase, putative [Ricinus communis]
19 Hb_000178_130 0.1510308426 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
20 Hb_000005_080 0.1526948536 - - PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Elaeis guineensis]

Gene co-expression network

sample Hb_000914_090 Hb_000914_090 Hb_001205_070 Hb_001205_070 Hb_000914_090--Hb_001205_070 Hb_000879_010 Hb_000879_010 Hb_000914_090--Hb_000879_010 Hb_000196_050 Hb_000196_050 Hb_000914_090--Hb_000196_050 Hb_002811_230 Hb_002811_230 Hb_000914_090--Hb_002811_230 Hb_002909_070 Hb_002909_070 Hb_000914_090--Hb_002909_070 Hb_006582_020 Hb_006582_020 Hb_000914_090--Hb_006582_020 Hb_018790_060 Hb_018790_060 Hb_001205_070--Hb_018790_060 Hb_002631_060 Hb_002631_060 Hb_001205_070--Hb_002631_060 Hb_001488_070 Hb_001488_070 Hb_001205_070--Hb_001488_070 Hb_003376_350 Hb_003376_350 Hb_001205_070--Hb_003376_350 Hb_000413_010 Hb_000413_010 Hb_001205_070--Hb_000413_010 Hb_000061_420 Hb_000061_420 Hb_001205_070--Hb_000061_420 Hb_000879_010--Hb_002811_230 Hb_001442_020 Hb_001442_020 Hb_000879_010--Hb_001442_020 Hb_007617_020 Hb_007617_020 Hb_000879_010--Hb_007617_020 Hb_000879_010--Hb_000196_050 Hb_000879_010--Hb_001205_070 Hb_003683_040 Hb_003683_040 Hb_000196_050--Hb_003683_040 Hb_002316_060 Hb_002316_060 Hb_000196_050--Hb_002316_060 Hb_000184_050 Hb_000184_050 Hb_000196_050--Hb_000184_050 Hb_009554_010 Hb_009554_010 Hb_000196_050--Hb_009554_010 Hb_000815_260 Hb_000815_260 Hb_000196_050--Hb_000815_260 Hb_031042_010 Hb_031042_010 Hb_000196_050--Hb_031042_010 Hb_001159_140 Hb_001159_140 Hb_002811_230--Hb_001159_140 Hb_002811_230--Hb_007617_020 Hb_001946_210 Hb_001946_210 Hb_002811_230--Hb_001946_210 Hb_000189_270 Hb_000189_270 Hb_002811_230--Hb_000189_270 Hb_003641_020 Hb_003641_020 Hb_002811_230--Hb_003641_020 Hb_003992_240 Hb_003992_240 Hb_002811_230--Hb_003992_240 Hb_000030_150 Hb_000030_150 Hb_002909_070--Hb_000030_150 Hb_003893_090 Hb_003893_090 Hb_002909_070--Hb_003893_090 Hb_000905_200 Hb_000905_200 Hb_002909_070--Hb_000905_200 Hb_003106_050 Hb_003106_050 Hb_002909_070--Hb_003106_050 Hb_002182_060 Hb_002182_060 Hb_002909_070--Hb_002182_060 Hb_002301_140 Hb_002301_140 Hb_002909_070--Hb_002301_140 Hb_002435_110 Hb_002435_110 Hb_006582_020--Hb_002435_110 Hb_004032_270 Hb_004032_270 Hb_006582_020--Hb_004032_270 Hb_005843_100 Hb_005843_100 Hb_006582_020--Hb_005843_100 Hb_000016_100 Hb_000016_100 Hb_006582_020--Hb_000016_100 Hb_001318_030 Hb_001318_030 Hb_006582_020--Hb_001318_030 Hb_000237_080 Hb_000237_080 Hb_006582_020--Hb_000237_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.8763 21.4445 3.31137 11.3787 7.1016 12.1932
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.2473 33.7269 16.8924 8.12036 1.4085

CAGE analysis