Hb_000914_110

Information

Type transcription factor
Description TF Family: C2H2
Location Contig914: 99886-102218
Sequence    

Annotation

kegg
ID tcc:TCM_040610
description C2H2-type zinc finger family protein
nr
ID XP_012089972.1
description PREDICTED: zinc finger protein WIP2 [Jatropha curcas]
swissprot
ID Q9SVY1
description Zinc finger protein WIP2 OS=Arabidopsis thaliana GN=WIP2 PE=1 SV=1
trembl
ID A0A067JE16
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25903 PE=4 SV=1
Gene Ontology
ID GO:0003676
description protein transparent testa 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000914_110 0.0 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein WIP2 [Jatropha curcas]
2 Hb_002078_250 0.1237307113 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003579_040 0.1320426755 - - PREDICTED: monoacylglycerol lipase ABHD6 [Jatropha curcas]
4 Hb_000411_050 0.133741321 - - hypothetical protein AMTR_s00066p00166230 [Amborella trichopoda]
5 Hb_168068_010 0.1403535429 - - Disease resistance protein RFL1, putative [Ricinus communis]
6 Hb_010573_040 0.1408822504 - - PREDICTED: zinc-metallopeptidase, peroxisomal isoform X2 [Populus euphratica]
7 Hb_028841_010 0.1412945459 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase CES101 [Jatropha curcas]
8 Hb_004544_090 0.1418445998 - - cytochrome P450, putative [Ricinus communis]
9 Hb_000111_190 0.1483171396 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1 [Jatropha curcas]
10 Hb_131662_010 0.1486828119 - - Insulin-degrading enzyme, putative [Ricinus communis]
11 Hb_005087_030 0.1499610437 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
12 Hb_006002_010 0.1506470773 transcription factor TF Family: MYB Myb domain protein 5 isoform 1 [Theobroma cacao]
13 Hb_189034_010 0.1529212715 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_002370_060 0.1548469868 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Populus euphratica]
15 Hb_177215_020 0.1569337602 - - acc synthase, putative [Ricinus communis]
16 Hb_000137_030 0.1574698894 - - PREDICTED: cysteine-rich repeat secretory protein 55-like [Citrus sinensis]
17 Hb_003025_150 0.1575595359 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002325_050 0.1589551928 transcription factor TF Family: MYB MYB transcriptional factor [Populus nigra]
19 Hb_082870_010 0.1604048615 - - Disease resistance protein RFL1, putative [Ricinus communis]
20 Hb_003656_170 0.1618579779 - - PREDICTED: phenylalanine ammonia-lyase-like [Jatropha curcas]

Gene co-expression network

sample Hb_000914_110 Hb_000914_110 Hb_002078_250 Hb_002078_250 Hb_000914_110--Hb_002078_250 Hb_003579_040 Hb_003579_040 Hb_000914_110--Hb_003579_040 Hb_000411_050 Hb_000411_050 Hb_000914_110--Hb_000411_050 Hb_168068_010 Hb_168068_010 Hb_000914_110--Hb_168068_010 Hb_010573_040 Hb_010573_040 Hb_000914_110--Hb_010573_040 Hb_028841_010 Hb_028841_010 Hb_000914_110--Hb_028841_010 Hb_002078_250--Hb_000411_050 Hb_003656_170 Hb_003656_170 Hb_002078_250--Hb_003656_170 Hb_003964_010 Hb_003964_010 Hb_002078_250--Hb_003964_010 Hb_001123_170 Hb_001123_170 Hb_002078_250--Hb_001123_170 Hb_004544_090 Hb_004544_090 Hb_002078_250--Hb_004544_090 Hb_003025_150 Hb_003025_150 Hb_002078_250--Hb_003025_150 Hb_003579_040--Hb_003025_150 Hb_002324_040 Hb_002324_040 Hb_003579_040--Hb_002324_040 Hb_000111_190 Hb_000111_190 Hb_003579_040--Hb_000111_190 Hb_012727_010 Hb_012727_010 Hb_003579_040--Hb_012727_010 Hb_003579_040--Hb_004544_090 Hb_002450_180 Hb_002450_180 Hb_000411_050--Hb_002450_180 Hb_000847_050 Hb_000847_050 Hb_000411_050--Hb_000847_050 Hb_000411_050--Hb_004544_090 Hb_000454_200 Hb_000454_200 Hb_000411_050--Hb_000454_200 Hb_000679_260 Hb_000679_260 Hb_000411_050--Hb_000679_260 Hb_005087_030 Hb_005087_030 Hb_168068_010--Hb_005087_030 Hb_000771_030 Hb_000771_030 Hb_168068_010--Hb_000771_030 Hb_068332_010 Hb_068332_010 Hb_168068_010--Hb_068332_010 Hb_131662_010 Hb_131662_010 Hb_168068_010--Hb_131662_010 Hb_168068_010--Hb_004544_090 Hb_000417_120 Hb_000417_120 Hb_168068_010--Hb_000417_120 Hb_000110_030 Hb_000110_030 Hb_010573_040--Hb_000110_030 Hb_010573_040--Hb_131662_010 Hb_008959_050 Hb_008959_050 Hb_010573_040--Hb_008959_050 Hb_177215_020 Hb_177215_020 Hb_010573_040--Hb_177215_020 Hb_036356_010 Hb_036356_010 Hb_010573_040--Hb_036356_010 Hb_010573_040--Hb_000771_030 Hb_028841_010--Hb_177215_020 Hb_004631_100 Hb_004631_100 Hb_028841_010--Hb_004631_100 Hb_002325_050 Hb_002325_050 Hb_028841_010--Hb_002325_050 Hb_002676_110 Hb_002676_110 Hb_028841_010--Hb_002676_110 Hb_003849_200 Hb_003849_200 Hb_028841_010--Hb_003849_200 Hb_002888_100 Hb_002888_100 Hb_028841_010--Hb_002888_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.29601 1.12631 1.98663 0.190402 0.0397709
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.16158 0.332384

CAGE analysis