Hb_000915_030

Information

Type transcription factor
Description TF Family: HB
Location Contig915: 34400-35788
Sequence    

Annotation

kegg
ID rcu:RCOM_0017360
description Protein WUSCHEL, putative
nr
ID XP_002530735.1
description Protein WUSCHEL, putative [Ricinus communis]
swissprot
ID Q8LL11
description Protein WUSCHEL OS=Petunia hybrida GN=WUS PE=2 SV=1
trembl
ID B9SXL6
description Protein WUSCHEL, putative OS=Ricinus communis GN=RCOM_0017360 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein wuschel

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000915_030 0.0 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
2 Hb_014568_020 0.1487950042 - - PREDICTED: GPI mannosyltransferase 2 [Jatropha curcas]
3 Hb_181240_010 0.1871131077 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
4 Hb_000608_460 0.2107519735 - - -
5 Hb_004734_050 0.2245719581 - - -
6 Hb_000363_150 0.2456976173 - - hypothetical protein POPTR_0011s09040g [Populus trichocarpa]
7 Hb_004448_060 0.2491006339 - - conserved hypothetical protein [Ricinus communis]
8 Hb_119504_010 0.2542575796 - - hypothetical protein JCGZ_15304 [Jatropha curcas]
9 Hb_026239_010 0.2795949674 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
10 Hb_020334_010 0.2842371089 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
11 Hb_007181_020 0.2873794869 - - PREDICTED: uncharacterized protein At4g04980-like [Populus euphratica]
12 Hb_000906_130 0.2890231195 - - -
13 Hb_001780_140 0.295407747 - - Uncharacterized protein isoform 1 [Theobroma cacao]
14 Hb_006342_020 0.2964737166 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_069251_010 0.2976622997 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
16 Hb_002888_010 0.2978348529 - - -
17 Hb_004324_080 0.30305846 - - -
18 Hb_003005_040 0.304267233 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_001842_130 0.3054882869 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000111_010 0.3096457299 - - DNA-directed RNA polymerase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000915_030 Hb_000915_030 Hb_014568_020 Hb_014568_020 Hb_000915_030--Hb_014568_020 Hb_181240_010 Hb_181240_010 Hb_000915_030--Hb_181240_010 Hb_000608_460 Hb_000608_460 Hb_000915_030--Hb_000608_460 Hb_004734_050 Hb_004734_050 Hb_000915_030--Hb_004734_050 Hb_000363_150 Hb_000363_150 Hb_000915_030--Hb_000363_150 Hb_004448_060 Hb_004448_060 Hb_000915_030--Hb_004448_060 Hb_014568_020--Hb_000608_460 Hb_014568_020--Hb_181240_010 Hb_002888_010 Hb_002888_010 Hb_014568_020--Hb_002888_010 Hb_014568_020--Hb_000363_150 Hb_004324_080 Hb_004324_080 Hb_014568_020--Hb_004324_080 Hb_181240_010--Hb_004734_050 Hb_181240_010--Hb_004324_080 Hb_181240_010--Hb_000608_460 Hb_003005_040 Hb_003005_040 Hb_181240_010--Hb_003005_040 Hb_000608_460--Hb_002888_010 Hb_000608_460--Hb_004324_080 Hb_000608_460--Hb_004448_060 Hb_003124_060 Hb_003124_060 Hb_004734_050--Hb_003124_060 Hb_004734_050--Hb_004448_060 Hb_042202_050 Hb_042202_050 Hb_004734_050--Hb_042202_050 Hb_011484_010 Hb_011484_010 Hb_004734_050--Hb_011484_010 Hb_000111_010 Hb_000111_010 Hb_000363_150--Hb_000111_010 Hb_000856_370 Hb_000856_370 Hb_000363_150--Hb_000856_370 Hb_012053_040 Hb_012053_040 Hb_000363_150--Hb_012053_040 Hb_088538_010 Hb_088538_010 Hb_000363_150--Hb_088538_010 Hb_000227_200 Hb_000227_200 Hb_000363_150--Hb_000227_200 Hb_001158_190 Hb_001158_190 Hb_000363_150--Hb_001158_190 Hb_000258_450 Hb_000258_450 Hb_004448_060--Hb_000258_450 Hb_006342_020 Hb_006342_020 Hb_004448_060--Hb_006342_020 Hb_007904_170 Hb_007904_170 Hb_004448_060--Hb_007904_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.061564 0.0968239 0.176215 0.0195505 0.0978274

CAGE analysis