Hb_000915_060

Information

Type -
Description -
Location Contig915: 52408-56628
Sequence    

Annotation

kegg
ID vvi:100245437
description uncharacterized LOC100245437
nr
ID XP_012065733.1
description PREDICTED: uncharacterized protein LOC105628864 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID D7SP05
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g03280 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 sumo-protein ligase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62212: 52410-56681
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000915_060 0.0 - - PREDICTED: uncharacterized protein LOC105628864 [Jatropha curcas]
2 Hb_000373_230 0.062296236 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
3 Hb_003849_140 0.0624610442 - - PREDICTED: uncharacterized protein LOC105644697 [Jatropha curcas]
4 Hb_001277_020 0.0694691564 - - PREDICTED: armadillo repeat-containing protein LFR [Jatropha curcas]
5 Hb_000723_110 0.0728001524 - - PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
6 Hb_001410_020 0.0735709371 - - cdk8, putative [Ricinus communis]
7 Hb_000236_470 0.0797419927 - - PREDICTED: pentatricopeptide repeat-containing protein At5g55840 [Jatropha curcas]
8 Hb_012565_050 0.0798110484 - - PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa [Jatropha curcas]
9 Hb_004870_050 0.0813371503 - - PREDICTED: ATP-dependent RNA helicase DBP3 [Jatropha curcas]
10 Hb_004032_230 0.0852094962 - - PREDICTED: uncharacterized protein LOC105635143 [Jatropha curcas]
11 Hb_003927_040 0.0855669057 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
12 Hb_001636_050 0.0857788438 transcription factor TF Family: NF-X1 nuclear transcription factor, X-box binding, putative [Ricinus communis]
13 Hb_000094_090 0.0870892764 - - PREDICTED: DUF21 domain-containing protein At1g47330 isoform X1 [Jatropha curcas]
14 Hb_007426_060 0.0871833295 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
15 Hb_001534_210 0.0872020553 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
16 Hb_000556_170 0.0886949155 - - PREDICTED: uncharacterized protein LOC105643102 isoform X2 [Jatropha curcas]
17 Hb_140049_040 0.0888734186 - - PREDICTED: uncharacterized protein LOC105632012 [Jatropha curcas]
18 Hb_004410_070 0.0888973038 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
19 Hb_012779_090 0.0889396117 - - PREDICTED: lipase member N [Jatropha curcas]
20 Hb_162275_050 0.0890280651 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]

Gene co-expression network

sample Hb_000915_060 Hb_000915_060 Hb_000373_230 Hb_000373_230 Hb_000915_060--Hb_000373_230 Hb_003849_140 Hb_003849_140 Hb_000915_060--Hb_003849_140 Hb_001277_020 Hb_001277_020 Hb_000915_060--Hb_001277_020 Hb_000723_110 Hb_000723_110 Hb_000915_060--Hb_000723_110 Hb_001410_020 Hb_001410_020 Hb_000915_060--Hb_001410_020 Hb_000236_470 Hb_000236_470 Hb_000915_060--Hb_000236_470 Hb_000094_090 Hb_000094_090 Hb_000373_230--Hb_000094_090 Hb_000373_230--Hb_000723_110 Hb_000373_230--Hb_001410_020 Hb_000363_120 Hb_000363_120 Hb_000373_230--Hb_000363_120 Hb_000809_160 Hb_000809_160 Hb_000373_230--Hb_000809_160 Hb_001534_210 Hb_001534_210 Hb_003849_140--Hb_001534_210 Hb_004032_230 Hb_004032_230 Hb_003849_140--Hb_004032_230 Hb_003849_140--Hb_000723_110 Hb_026980_020 Hb_026980_020 Hb_003849_140--Hb_026980_020 Hb_000500_300 Hb_000500_300 Hb_003849_140--Hb_000500_300 Hb_001430_080 Hb_001430_080 Hb_001277_020--Hb_001430_080 Hb_001277_020--Hb_000236_470 Hb_140049_040 Hb_140049_040 Hb_001277_020--Hb_140049_040 Hb_008147_040 Hb_008147_040 Hb_001277_020--Hb_008147_040 Hb_000099_040 Hb_000099_040 Hb_001277_020--Hb_000099_040 Hb_000011_100 Hb_000011_100 Hb_001277_020--Hb_000011_100 Hb_007017_070 Hb_007017_070 Hb_000723_110--Hb_007017_070 Hb_000926_010 Hb_000926_010 Hb_000723_110--Hb_000926_010 Hb_000723_110--Hb_000809_160 Hb_004410_070 Hb_004410_070 Hb_000723_110--Hb_004410_070 Hb_000723_110--Hb_000094_090 Hb_000260_180 Hb_000260_180 Hb_001410_020--Hb_000260_180 Hb_162275_050 Hb_162275_050 Hb_001410_020--Hb_162275_050 Hb_012779_090 Hb_012779_090 Hb_001410_020--Hb_012779_090 Hb_006588_210 Hb_006588_210 Hb_001410_020--Hb_006588_210 Hb_000025_730 Hb_000025_730 Hb_001410_020--Hb_000025_730 Hb_000640_310 Hb_000640_310 Hb_000236_470--Hb_000640_310 Hb_002701_150 Hb_002701_150 Hb_000236_470--Hb_002701_150 Hb_001047_200 Hb_001047_200 Hb_000236_470--Hb_001047_200 Hb_120803_010 Hb_120803_010 Hb_000236_470--Hb_120803_010 Hb_000556_170 Hb_000556_170 Hb_000236_470--Hb_000556_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.3618 27.7694 20.694 8.79957 19.5747 11.6941
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.72583 13.0573 10.4348 14.1432 10.4342

CAGE analysis