Hb_000915_080

Information

Type -
Description -
Location Contig915: 68669-72380
Sequence    

Annotation

kegg
ID rcu:RCOM_0017860
description hypothetical protein
nr
ID XP_012065650.1
description PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LHC2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06511 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62215: 68674-72292 , PASA_asmbl_62216: 69195-69590
cDNA
(Sanger)
(ID:Location)		 007_C19.ab1: 68680-70797

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000915_080 0.0 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
2 Hb_000007_280 0.0628084703 - - hypothetical protein VITISV_000066 [Vitis vinifera]
3 Hb_002836_140 0.062836661 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
4 Hb_000101_380 0.067135195 - - PREDICTED: clathrin light chain 2-like isoform X2 [Populus euphratica]
5 Hb_002042_030 0.0710722972 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
6 Hb_002783_170 0.0716126588 - - PREDICTED: BRCA1-A complex subunit BRE isoform X2 [Jatropha curcas]
7 Hb_000414_050 0.073540958 - - hypothetical protein JCGZ_19588 [Jatropha curcas]
8 Hb_027472_120 0.0768515506 - - PREDICTED: thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial isoform X1 [Jatropha curcas]
9 Hb_008556_030 0.080851271 - - PREDICTED: uncharacterized protein LOC105648021 isoform X1 [Jatropha curcas]
10 Hb_001005_030 0.0823778374 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
11 Hb_150651_030 0.0824417044 - - PREDICTED: metallophosphoesterase 1-like [Jatropha curcas]
12 Hb_058999_030 0.0842053506 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
13 Hb_001418_040 0.084329491 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1-like [Jatropha curcas]
14 Hb_013726_080 0.085204768 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
15 Hb_000776_100 0.085219184 - - Cleavage stimulation factor 50 kDa subunit, putative [Ricinus communis]
16 Hb_003126_100 0.0865877085 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
17 Hb_004032_410 0.0867831526 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
18 Hb_007951_040 0.0869539685 - - signal peptidase family protein [Populus trichocarpa]
19 Hb_000139_260 0.0874503754 - - PREDICTED: protein phosphatase 2C 70 [Jatropha curcas]
20 Hb_143629_150 0.0875847861 - - PREDICTED: flap endonuclease 1 isoform X2 [Prunus mume]

Gene co-expression network

sample Hb_000915_080 Hb_000915_080 Hb_000007_280 Hb_000007_280 Hb_000915_080--Hb_000007_280 Hb_002836_140 Hb_002836_140 Hb_000915_080--Hb_002836_140 Hb_000101_380 Hb_000101_380 Hb_000915_080--Hb_000101_380 Hb_002042_030 Hb_002042_030 Hb_000915_080--Hb_002042_030 Hb_002783_170 Hb_002783_170 Hb_000915_080--Hb_002783_170 Hb_000414_050 Hb_000414_050 Hb_000915_080--Hb_000414_050 Hb_000007_280--Hb_000101_380 Hb_003549_090 Hb_003549_090 Hb_000007_280--Hb_003549_090 Hb_001005_030 Hb_001005_030 Hb_000007_280--Hb_001005_030 Hb_011310_130 Hb_011310_130 Hb_000007_280--Hb_011310_130 Hb_010272_010 Hb_010272_010 Hb_000007_280--Hb_010272_010 Hb_007951_040 Hb_007951_040 Hb_002836_140--Hb_007951_040 Hb_008556_030 Hb_008556_030 Hb_002836_140--Hb_008556_030 Hb_002836_140--Hb_000414_050 Hb_002836_140--Hb_002783_170 Hb_001486_170 Hb_001486_170 Hb_002836_140--Hb_001486_170 Hb_000776_100 Hb_000776_100 Hb_000101_380--Hb_000776_100 Hb_000101_380--Hb_001005_030 Hb_017700_010 Hb_017700_010 Hb_000101_380--Hb_017700_010 Hb_000737_030 Hb_000737_030 Hb_000101_380--Hb_000737_030 Hb_002042_030--Hb_000414_050 Hb_001301_220 Hb_001301_220 Hb_002042_030--Hb_001301_220 Hb_000718_070 Hb_000718_070 Hb_002042_030--Hb_000718_070 Hb_001418_040 Hb_001418_040 Hb_002042_030--Hb_001418_040 Hb_027472_120 Hb_027472_120 Hb_002042_030--Hb_027472_120 Hb_002783_170--Hb_000414_050 Hb_002783_170--Hb_000776_100 Hb_002783_170--Hb_007951_040 Hb_002783_170--Hb_000101_380 Hb_000414_050--Hb_000776_100 Hb_000138_130 Hb_000138_130 Hb_000414_050--Hb_000138_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.0373 13.5609 30.3757 24.5253 37.8875 30.9626
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.5273 15.8304 10.8427 15.1838 18.7779

CAGE analysis