Hb_000915_090

Information

Type -
Description -
Location Contig915: 73389-76902
Sequence    

Annotation

kegg
ID rcu:RCOM_0017880
description YEATS domain-containing protein, putative
nr
ID XP_012065629.1
description PREDICTED: transcription initiation factor TFIID subunit 14b [Jatropha curcas]
swissprot
ID Q9FH40
description Transcription initiation factor TFIID subunit 14b OS=Arabidopsis thaliana GN=TAF14B PE=1 SV=1
trembl
ID A0A067LED4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06510 PE=4 SV=1
Gene Ontology
ID GO:0006355
description transcription initiation factor tfiid subunit 14b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62217: 73453-76894
cDNA
(Sanger)
(ID:Location)		 051_E20.ab1: 73453-74788

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000915_090 0.0 - - PREDICTED: transcription initiation factor TFIID subunit 14b [Jatropha curcas]
2 Hb_004635_100 0.0646803181 - - PREDICTED: L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase isoform X1 [Jatropha curcas]
3 Hb_002163_020 0.077857709 transcription factor TF Family: PHD PREDICTED: BAH and coiled-coil domain-containing protein 1-like [Jatropha curcas]
4 Hb_008725_260 0.0791633106 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
5 Hb_010422_060 0.0841507951 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
6 Hb_000240_090 0.0844989864 - - Rab5 [Hevea brasiliensis]
7 Hb_004109_170 0.0855125861 - - PREDICTED: probable ribokinase [Jatropha curcas]
8 Hb_002046_180 0.0861335562 - - PREDICTED: uncharacterized protein LOC105641295 [Jatropha curcas]
9 Hb_005846_040 0.0868332871 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Populus euphratica]
10 Hb_001766_060 0.0880170093 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000340_570 0.0880828124 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
12 Hb_000155_200 0.0883260389 - - Rab7 [Hevea brasiliensis]
13 Hb_000638_250 0.0886513316 - - WD-repeat protein, putative [Ricinus communis]
14 Hb_000876_070 0.0886816049 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
15 Hb_029879_130 0.0886846104 - - Derlin-2, putative [Ricinus communis]
16 Hb_002284_010 0.0889233589 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004586_340 0.0901712322 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
18 Hb_003349_090 0.0903106956 - - PREDICTED: diphthamide biosynthesis protein 2 [Jatropha curcas]
19 Hb_001245_100 0.0906440309 transcription factor TF Family: Alfin-like ATP synthase alpha subunit mitochondrial, putative [Ricinus communis]
20 Hb_011173_050 0.09121724 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]

Gene co-expression network

sample Hb_000915_090 Hb_000915_090 Hb_004635_100 Hb_004635_100 Hb_000915_090--Hb_004635_100 Hb_002163_020 Hb_002163_020 Hb_000915_090--Hb_002163_020 Hb_008725_260 Hb_008725_260 Hb_000915_090--Hb_008725_260 Hb_010422_060 Hb_010422_060 Hb_000915_090--Hb_010422_060 Hb_000240_090 Hb_000240_090 Hb_000915_090--Hb_000240_090 Hb_004109_170 Hb_004109_170 Hb_000915_090--Hb_004109_170 Hb_004635_100--Hb_000240_090 Hb_001059_030 Hb_001059_030 Hb_004635_100--Hb_001059_030 Hb_029879_130 Hb_029879_130 Hb_004635_100--Hb_029879_130 Hb_000676_180 Hb_000676_180 Hb_004635_100--Hb_000676_180 Hb_000120_680 Hb_000120_680 Hb_004635_100--Hb_000120_680 Hb_011224_110 Hb_011224_110 Hb_002163_020--Hb_011224_110 Hb_029866_060 Hb_029866_060 Hb_002163_020--Hb_029866_060 Hb_002284_010 Hb_002284_010 Hb_002163_020--Hb_002284_010 Hb_005941_040 Hb_005941_040 Hb_002163_020--Hb_005941_040 Hb_002163_020--Hb_000240_090 Hb_002110_150 Hb_002110_150 Hb_008725_260--Hb_002110_150 Hb_002046_180 Hb_002046_180 Hb_008725_260--Hb_002046_180 Hb_000866_220 Hb_000866_220 Hb_008725_260--Hb_000866_220 Hb_009178_030 Hb_009178_030 Hb_008725_260--Hb_009178_030 Hb_000876_070 Hb_000876_070 Hb_008725_260--Hb_000876_070 Hb_007532_030 Hb_007532_030 Hb_008725_260--Hb_007532_030 Hb_002830_030 Hb_002830_030 Hb_010422_060--Hb_002830_030 Hb_010422_060--Hb_001059_030 Hb_000504_140 Hb_000504_140 Hb_010422_060--Hb_000504_140 Hb_000062_220 Hb_000062_220 Hb_010422_060--Hb_000062_220 Hb_005779_060 Hb_005779_060 Hb_010422_060--Hb_005779_060 Hb_004254_120 Hb_004254_120 Hb_010422_060--Hb_004254_120 Hb_000240_090--Hb_000120_680 Hb_129204_030 Hb_129204_030 Hb_000240_090--Hb_129204_030 Hb_000347_410 Hb_000347_410 Hb_000240_090--Hb_000347_410 Hb_029866_020 Hb_029866_020 Hb_000240_090--Hb_029866_020 Hb_021409_030 Hb_021409_030 Hb_000240_090--Hb_021409_030 Hb_000205_090 Hb_000205_090 Hb_004109_170--Hb_000205_090 Hb_000580_090 Hb_000580_090 Hb_004109_170--Hb_000580_090 Hb_000260_030 Hb_000260_030 Hb_004109_170--Hb_000260_030 Hb_118419_010 Hb_118419_010 Hb_004109_170--Hb_118419_010 Hb_012286_030 Hb_012286_030 Hb_004109_170--Hb_012286_030 Hb_006615_240 Hb_006615_240 Hb_004109_170--Hb_006615_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.4213 18.8767 16.3645 13.8608 13.2896 18.5745
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.5076 34.988 37.5355 12.5697 11.4656

CAGE analysis