Hb_000915_100

Information

Type -
Description -
Location Contig915: 80618-80920
Sequence    

Annotation

kegg
ID tcc:TCM_046673
description SAUR family protein
nr
ID XP_012065618.1
description PREDICTED: auxin-induced protein 15A [Jatropha curcas]
swissprot
ID P33081
description Auxin-induced protein 15A OS=Glycine max PE=2 SV=1
trembl
ID A0A067LE58
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06509 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62219: 80606-81074
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000915_100 0.0 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]
2 Hb_000046_200 0.1736439016 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
3 Hb_000345_430 0.2080446979 - - 40S ribosomal protein S24A [Hevea brasiliensis]
4 Hb_001842_120 0.2096299848 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
5 Hb_000500_210 0.2209286044 - - -
6 Hb_000879_210 0.2221020834 - - hypothetical protein POPTR_0014s01620g [Populus trichocarpa]
7 Hb_004755_030 0.2252836826 - - EG964 [Manihot glaziovii]
8 Hb_008887_040 0.2273933193 - - Ribonuclease P family protein / Rpp14 family protein isoform 1 [Theobroma cacao]
9 Hb_009659_020 0.229625282 - - PREDICTED: uncharacterized protein LOC103870090 [Brassica rapa]
10 Hb_000270_730 0.2336408715 - - PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa-like [Jatropha curcas]
11 Hb_005199_010 0.2367722324 - - conserved hypothetical protein [Ricinus communis]
12 Hb_011224_040 0.2369709489 - - PREDICTED: ER membrane protein complex subunit 8/9 homolog [Jatropha curcas]
13 Hb_021924_010 0.2381187114 - - hypothetical protein CISIN_1g0405342mg, partial [Citrus sinensis]
14 Hb_000181_380 0.2422002818 - - PREDICTED: cytochrome c oxidase copper chaperone 1 [Jatropha curcas]
15 Hb_000275_010 0.246909733 - - -
16 Hb_010812_150 0.2482572016 - - hypothetical protein CICLE_v10009763mg [Citrus clementina]
17 Hb_001587_060 0.248351649 - - conserved hypothetical protein [Ricinus communis]
18 Hb_186158_010 0.2488039562 - - conserved hypothetical protein [Ricinus communis]
19 Hb_187024_070 0.2492975337 - - PREDICTED: uncharacterized protein LOC105785446 [Gossypium raimondii]
20 Hb_002260_020 0.2502008292 - - -

Gene co-expression network

sample Hb_000915_100 Hb_000915_100 Hb_000046_200 Hb_000046_200 Hb_000915_100--Hb_000046_200 Hb_000345_430 Hb_000345_430 Hb_000915_100--Hb_000345_430 Hb_001842_120 Hb_001842_120 Hb_000915_100--Hb_001842_120 Hb_000500_210 Hb_000500_210 Hb_000915_100--Hb_000500_210 Hb_000879_210 Hb_000879_210 Hb_000915_100--Hb_000879_210 Hb_004755_030 Hb_004755_030 Hb_000915_100--Hb_004755_030 Hb_011224_040 Hb_011224_040 Hb_000046_200--Hb_011224_040 Hb_000046_200--Hb_001842_120 Hb_000046_200--Hb_000500_210 Hb_000975_270 Hb_000975_270 Hb_000046_200--Hb_000975_270 Hb_001425_110 Hb_001425_110 Hb_000046_200--Hb_001425_110 Hb_009659_020 Hb_009659_020 Hb_000345_430--Hb_009659_020 Hb_015978_070 Hb_015978_070 Hb_000345_430--Hb_015978_070 Hb_129204_010 Hb_129204_010 Hb_000345_430--Hb_129204_010 Hb_012305_120 Hb_012305_120 Hb_000345_430--Hb_012305_120 Hb_007520_060 Hb_007520_060 Hb_000345_430--Hb_007520_060 Hb_001587_060 Hb_001587_060 Hb_000345_430--Hb_001587_060 Hb_183612_080 Hb_183612_080 Hb_001842_120--Hb_183612_080 Hb_001504_320 Hb_001504_320 Hb_001842_120--Hb_001504_320 Hb_001842_120--Hb_001425_110 Hb_001842_080 Hb_001842_080 Hb_001842_120--Hb_001842_080 Hb_000270_730 Hb_000270_730 Hb_001842_120--Hb_000270_730 Hb_000500_210--Hb_011224_040 Hb_004429_110 Hb_004429_110 Hb_000500_210--Hb_004429_110 Hb_000454_180 Hb_000454_180 Hb_000500_210--Hb_000454_180 Hb_008887_040 Hb_008887_040 Hb_000500_210--Hb_008887_040 Hb_007943_140 Hb_007943_140 Hb_000500_210--Hb_007943_140 Hb_000500_210--Hb_004755_030 Hb_000431_160 Hb_000431_160 Hb_000879_210--Hb_000431_160 Hb_000617_110 Hb_000617_110 Hb_000879_210--Hb_000617_110 Hb_044653_060 Hb_044653_060 Hb_000879_210--Hb_044653_060 Hb_004545_130 Hb_004545_130 Hb_000879_210--Hb_004545_130 Hb_000819_070 Hb_000819_070 Hb_000879_210--Hb_000819_070 Hb_008748_020 Hb_008748_020 Hb_000879_210--Hb_008748_020 Hb_000270_720 Hb_000270_720 Hb_004755_030--Hb_000270_720 Hb_000789_110 Hb_000789_110 Hb_004755_030--Hb_000789_110 Hb_004755_030--Hb_008887_040 Hb_004007_180 Hb_004007_180 Hb_004755_030--Hb_004007_180 Hb_002316_120 Hb_002316_120 Hb_004755_030--Hb_002316_120 Hb_000975_180 Hb_000975_180 Hb_004755_030--Hb_000975_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.05234 0 0.127745 1.52452 0 1.54897
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.93626 10.6373 0.821905 0 0.892926

CAGE analysis