Hb_000915_110

Information

Type -
Description -
Location Contig915: 84141-88435
Sequence    

Annotation

kegg
ID rcu:RCOM_0017890
description methionine sulfoxide reductase, putative (EC:1.8.4.11)
nr
ID XP_012065607.1
description PREDICTED: peptide methionine sulfoxide reductase A5 [Jatropha curcas]
swissprot
ID Q9SL43
description Peptide methionine sulfoxide reductase A5 OS=Arabidopsis thaliana GN=MSRA5 PE=2 SV=1
trembl
ID A0A067LPD6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06508 PE=3 SV=1
Gene Ontology
ID GO:0008113
description peptide methionine sulfoxide reductase a5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62220: 84131-87649 , PASA_asmbl_62221: 85016-85259
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000915_110 0.0 - - PREDICTED: peptide methionine sulfoxide reductase A5 [Jatropha curcas]
2 Hb_000606_090 0.0944217582 - - Far upstream element-binding protein, putative [Ricinus communis]
3 Hb_000705_120 0.096016538 - - glycosyltransferase, putative [Ricinus communis]
4 Hb_000567_360 0.0961193445 - - hypothetical protein CISIN_1g004656mg [Citrus sinensis]
5 Hb_030131_040 0.0971727672 - - ribosome biogenesis protein tsr1, putative [Ricinus communis]
6 Hb_001444_010 0.0974722403 transcription factor TF Family: DDT PREDICTED: DDT domain-containing protein DDB_G0282237 isoform X1 [Jatropha curcas]
7 Hb_001341_120 0.100954228 - - hypothetical protein B456_001G130300 [Gossypium raimondii]
8 Hb_000392_370 0.1013378427 - - PREDICTED: protein IQ-DOMAIN 31-like [Jatropha curcas]
9 Hb_041290_010 0.1037018441 - - thioredoxin family protein [Populus trichocarpa]
10 Hb_000679_130 0.1043586331 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
11 Hb_002750_050 0.1046274768 - - Chromosome-associated kinesin KLP1, putative [Ricinus communis]
12 Hb_001541_090 0.1047592453 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
13 Hb_000797_050 0.1053386531 - - PREDICTED: uncharacterized protein LOC105645916 [Jatropha curcas]
14 Hb_000982_160 0.106049672 - - PREDICTED: CLIP-associated protein [Jatropha curcas]
15 Hb_000025_110 0.1063580316 - - hypothetical protein JCGZ_22722 [Jatropha curcas]
16 Hb_000367_130 0.1072167317 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001300_070 0.1104343029 - - OTU domain-containing protein 6B, putative [Ricinus communis]
18 Hb_005098_010 0.1110319449 - - PREDICTED: L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase-like [Jatropha curcas]
19 Hb_000212_240 0.1110340681 - - short-chain dehydrogenase, putative [Ricinus communis]
20 Hb_058999_030 0.1119251836 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000915_110 Hb_000915_110 Hb_000606_090 Hb_000606_090 Hb_000915_110--Hb_000606_090 Hb_000705_120 Hb_000705_120 Hb_000915_110--Hb_000705_120 Hb_000567_360 Hb_000567_360 Hb_000915_110--Hb_000567_360 Hb_030131_040 Hb_030131_040 Hb_000915_110--Hb_030131_040 Hb_001444_010 Hb_001444_010 Hb_000915_110--Hb_001444_010 Hb_001341_120 Hb_001341_120 Hb_000915_110--Hb_001341_120 Hb_001135_060 Hb_001135_060 Hb_000606_090--Hb_001135_060 Hb_000212_240 Hb_000212_240 Hb_000606_090--Hb_000212_240 Hb_000494_040 Hb_000494_040 Hb_000606_090--Hb_000494_040 Hb_003665_060 Hb_003665_060 Hb_000606_090--Hb_003665_060 Hb_000606_090--Hb_001444_010 Hb_000025_110 Hb_000025_110 Hb_000606_090--Hb_000025_110 Hb_152202_010 Hb_152202_010 Hb_000705_120--Hb_152202_010 Hb_090051_030 Hb_090051_030 Hb_000705_120--Hb_090051_030 Hb_002078_160 Hb_002078_160 Hb_000705_120--Hb_002078_160 Hb_009529_030 Hb_009529_030 Hb_000705_120--Hb_009529_030 Hb_001482_040 Hb_001482_040 Hb_000705_120--Hb_001482_040 Hb_003044_100 Hb_003044_100 Hb_000567_360--Hb_003044_100 Hb_000364_060 Hb_000364_060 Hb_000567_360--Hb_000364_060 Hb_006064_010 Hb_006064_010 Hb_000567_360--Hb_006064_010 Hb_004195_280 Hb_004195_280 Hb_000567_360--Hb_004195_280 Hb_002587_020 Hb_002587_020 Hb_000567_360--Hb_002587_020 Hb_002273_130 Hb_002273_130 Hb_030131_040--Hb_002273_130 Hb_030131_040--Hb_001341_120 Hb_001085_320 Hb_001085_320 Hb_030131_040--Hb_001085_320 Hb_000913_050 Hb_000913_050 Hb_030131_040--Hb_000913_050 Hb_001488_410 Hb_001488_410 Hb_030131_040--Hb_001488_410 Hb_001541_090 Hb_001541_090 Hb_030131_040--Hb_001541_090 Hb_001444_010--Hb_000025_110 Hb_000618_030 Hb_000618_030 Hb_001444_010--Hb_000618_030 Hb_001444_010--Hb_000913_050 Hb_000679_130 Hb_000679_130 Hb_001444_010--Hb_000679_130 Hb_004994_040 Hb_004994_040 Hb_001444_010--Hb_004994_040 Hb_000797_050 Hb_000797_050 Hb_001444_010--Hb_000797_050 Hb_000076_270 Hb_000076_270 Hb_001341_120--Hb_000076_270 Hb_001341_120--Hb_002273_130 Hb_000480_010 Hb_000480_010 Hb_001341_120--Hb_000480_010 Hb_004837_190 Hb_004837_190 Hb_001341_120--Hb_004837_190 Hb_001341_120--Hb_000913_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.5059 9.26218 19.144 25.8958 44.372 50.5619
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.5724 18.1424 16.6661 11.5444 22.318

CAGE analysis