Hb_000915_120

Information

Type -
Description -
Location Contig915: 94631-98835
Sequence    

Annotation

kegg
ID tcc:TCM_000228
description Peptidylprolyl cis/trans isomerase
nr
ID XP_007046727.1
description Peptidylprolyl cis/trans isomerase [Theobroma cacao]
swissprot
ID Q94G00
description Peptidyl-prolyl cis-trans isomerase Pin1 OS=Malus domestica GN=PIN1 PE=2 SV=1
trembl
ID A0A061DFC2
description Peptidylprolyl cis/trans isomerase OS=Theobroma cacao GN=TCM_000228 PE=4 SV=1
Gene Ontology
ID GO:0005783
description peptidyl-prolyl cis-trans isomerase pin1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62223: 96303-98837
cDNA
(Sanger)
(ID:Location)		 018_F05.ab1: 96303-98751 , 037_E12.ab1: 96367-98837

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000915_120 0.0 - - Peptidylprolyl cis/trans isomerase [Theobroma cacao]
2 Hb_000203_020 0.0702534883 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
3 Hb_002838_030 0.0728666599 - - 40S ribosomal protein S25A [Hevea brasiliensis]
4 Hb_002006_130 0.073312844 - - PREDICTED: uncharacterized protein LOC105648712 [Jatropha curcas]
5 Hb_002588_010 0.077155544 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
6 Hb_006588_080 0.0835265911 - - hypothetical protein JCGZ_25746 [Jatropha curcas]
7 Hb_000062_390 0.0862637538 - - PREDICTED: protein Iojap-related, mitochondrial [Jatropha curcas]
8 Hb_000948_220 0.0870612273 - - hypothetical protein CICLE_v10013189mg [Citrus clementina]
9 Hb_000997_120 0.0872657787 - - 40S ribosomal protein S15E [Hevea brasiliensis]
10 Hb_000239_030 0.0880075705 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
11 Hb_008921_020 0.088160233 - - PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Jatropha curcas]
12 Hb_007120_090 0.0898749349 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
13 Hb_000878_020 0.0918665624 - - PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
14 Hb_026398_010 0.0920931246 - - hypothetical protein B456_010G132100 [Gossypium raimondii]
15 Hb_000042_260 0.0929858552 - - PREDICTED: uncharacterized protein LOC105632814 [Jatropha curcas]
16 Hb_004007_180 0.0931797422 - - PREDICTED: uncharacterized protein LOC105639838 [Jatropha curcas]
17 Hb_000115_230 0.0934901892 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
18 Hb_000093_110 0.0938764837 - - PREDICTED: cytochrome b5 isoform A [Jatropha curcas]
19 Hb_172221_010 0.094093408 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]
20 Hb_007304_070 0.0955908984 - - hypoxanthine-guanine phosphoribosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000915_120 Hb_000915_120 Hb_000203_020 Hb_000203_020 Hb_000915_120--Hb_000203_020 Hb_002838_030 Hb_002838_030 Hb_000915_120--Hb_002838_030 Hb_002006_130 Hb_002006_130 Hb_000915_120--Hb_002006_130 Hb_002588_010 Hb_002588_010 Hb_000915_120--Hb_002588_010 Hb_006588_080 Hb_006588_080 Hb_000915_120--Hb_006588_080 Hb_000062_390 Hb_000062_390 Hb_000915_120--Hb_000062_390 Hb_012251_010 Hb_012251_010 Hb_000203_020--Hb_012251_010 Hb_007120_090 Hb_007120_090 Hb_000203_020--Hb_007120_090 Hb_000042_260 Hb_000042_260 Hb_000203_020--Hb_000042_260 Hb_000045_250 Hb_000045_250 Hb_000203_020--Hb_000045_250 Hb_000203_020--Hb_002006_130 Hb_000997_120 Hb_000997_120 Hb_002838_030--Hb_000997_120 Hb_002838_030--Hb_007120_090 Hb_000948_220 Hb_000948_220 Hb_002838_030--Hb_000948_220 Hb_003020_330 Hb_003020_330 Hb_002838_030--Hb_003020_330 Hb_000087_130 Hb_000087_130 Hb_002838_030--Hb_000087_130 Hb_002006_130--Hb_002588_010 Hb_007304_070 Hb_007304_070 Hb_002006_130--Hb_007304_070 Hb_000331_700 Hb_000331_700 Hb_002006_130--Hb_000331_700 Hb_000093_110 Hb_000093_110 Hb_002006_130--Hb_000093_110 Hb_002588_010--Hb_000042_260 Hb_011311_010 Hb_011311_010 Hb_002588_010--Hb_011311_010 Hb_002588_010--Hb_000093_110 Hb_019516_100 Hb_019516_100 Hb_002588_010--Hb_019516_100 Hb_007944_040 Hb_007944_040 Hb_002588_010--Hb_007944_040 Hb_000111_340 Hb_000111_340 Hb_002588_010--Hb_000111_340 Hb_004735_050 Hb_004735_050 Hb_006588_080--Hb_004735_050 Hb_000878_020 Hb_000878_020 Hb_006588_080--Hb_000878_020 Hb_000635_080 Hb_000635_080 Hb_006588_080--Hb_000635_080 Hb_120823_010 Hb_120823_010 Hb_006588_080--Hb_120823_010 Hb_002316_120 Hb_002316_120 Hb_006588_080--Hb_002316_120 Hb_000172_420 Hb_000172_420 Hb_006588_080--Hb_000172_420 Hb_001634_040 Hb_001634_040 Hb_000062_390--Hb_001634_040 Hb_000062_390--Hb_002588_010 Hb_000062_390--Hb_019516_100 Hb_001155_040 Hb_001155_040 Hb_000062_390--Hb_001155_040 Hb_000062_390--Hb_000093_110 Hb_000062_390--Hb_007304_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.0549 22.1051 29.3891 59.3413 27.5595 36.7107
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
105.622 251.967 78.8699 37.4425 18.4502

CAGE analysis