Hb_000915_130

Information

Type -
Description -
Location Contig915: 103428-104555
Sequence    

Annotation

kegg
ID tcc:TCM_000230
description NAD(P)-binding Rossmann-fold superfamily protein
nr
ID XP_012065573.1
description PREDICTED: GDP-mannose 4,6 dehydratase 1 [Jatropha curcas]
swissprot
ID P93031
description GDP-mannose 4,6 dehydratase 2 OS=Arabidopsis thaliana GN=MUR1 PE=1 SV=3
trembl
ID A0A067LE53
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06504 PE=3 SV=1
Gene Ontology
ID GO:0008446
description gdp-mannose dehydratase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000915_130 0.0 - - PREDICTED: GDP-mannose 4,6 dehydratase 1 [Jatropha curcas]
2 Hb_000032_410 0.0765624493 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
3 Hb_005357_110 0.0895034483 - - hypothetical protein B456_002G083000 [Gossypium raimondii]
4 Hb_005511_130 0.09371733 - - PREDICTED: transmembrane protein 115-like [Populus euphratica]
5 Hb_000042_110 0.1063548059 - - PREDICTED: receptor-like protein kinase THESEUS 1 [Jatropha curcas]
6 Hb_000260_490 0.1081691282 - - PREDICTED: probable galacturonosyltransferase 7 isoform X3 [Jatropha curcas]
7 Hb_004730_020 0.1117492705 - - PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]
8 Hb_000968_060 0.1117523231 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
9 Hb_002281_010 0.1132613401 - - hypothetical protein POPTR_0001s47550g [Populus trichocarpa]
10 Hb_091318_010 0.1138284209 - - hypothetical protein POPTR_0001s09520g [Populus trichocarpa]
11 Hb_029253_010 0.1149233712 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
12 Hb_006925_050 0.1164792029 - - PREDICTED: inactive rhomboid protein 1-like [Jatropha curcas]
13 Hb_002217_320 0.1175686117 - - PREDICTED: probable O-acetyltransferase CAS1 isoform X2 [Jatropha curcas]
14 Hb_002900_150 0.1197920675 - - PREDICTED: syntaxin-81 [Jatropha curcas]
15 Hb_003687_080 0.1217733096 - - PREDICTED: casein kinase I-like [Jatropha curcas]
16 Hb_001328_050 0.1282805678 - - PREDICTED: uncharacterized protein LOC105640854 [Jatropha curcas]
17 Hb_001160_110 0.1287317154 - - PREDICTED: kinesin-related protein 13 [Jatropha curcas]
18 Hb_017098_040 0.1307170125 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
19 Hb_006829_070 0.1307545177 - - PREDICTED: uncharacterized protein LOC105632920 [Jatropha curcas]
20 Hb_002488_010 0.1313683188 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]

Gene co-expression network

sample Hb_000915_130 Hb_000915_130 Hb_000032_410 Hb_000032_410 Hb_000915_130--Hb_000032_410 Hb_005357_110 Hb_005357_110 Hb_000915_130--Hb_005357_110 Hb_005511_130 Hb_005511_130 Hb_000915_130--Hb_005511_130 Hb_000042_110 Hb_000042_110 Hb_000915_130--Hb_000042_110 Hb_000260_490 Hb_000260_490 Hb_000915_130--Hb_000260_490 Hb_004730_020 Hb_004730_020 Hb_000915_130--Hb_004730_020 Hb_000032_410--Hb_005357_110 Hb_004545_080 Hb_004545_080 Hb_000032_410--Hb_004545_080 Hb_000032_410--Hb_005511_130 Hb_029253_010 Hb_029253_010 Hb_000032_410--Hb_029253_010 Hb_000032_410--Hb_004730_020 Hb_005357_110--Hb_029253_010 Hb_003740_020 Hb_003740_020 Hb_005357_110--Hb_003740_020 Hb_005357_110--Hb_004730_020 Hb_005357_110--Hb_005511_130 Hb_005511_130--Hb_004730_020 Hb_003687_080 Hb_003687_080 Hb_005511_130--Hb_003687_080 Hb_000984_220 Hb_000984_220 Hb_005511_130--Hb_000984_220 Hb_000042_110--Hb_000260_490 Hb_001847_060 Hb_001847_060 Hb_000042_110--Hb_001847_060 Hb_011930_100 Hb_011930_100 Hb_000042_110--Hb_011930_100 Hb_000968_060 Hb_000968_060 Hb_000042_110--Hb_000968_060 Hb_001582_020 Hb_001582_020 Hb_000042_110--Hb_001582_020 Hb_000260_490--Hb_003687_080 Hb_007919_110 Hb_007919_110 Hb_000260_490--Hb_007919_110 Hb_074399_010 Hb_074399_010 Hb_000260_490--Hb_074399_010 Hb_002686_300 Hb_002686_300 Hb_000260_490--Hb_002686_300 Hb_000260_490--Hb_005511_130 Hb_001579_300 Hb_001579_300 Hb_004730_020--Hb_001579_300 Hb_000527_080 Hb_000527_080 Hb_004730_020--Hb_000527_080 Hb_004730_020--Hb_003740_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.56646 14.2284 31.492 29.6208 5.04512 2.9287
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.79733 2.9223 4.33466 4.10907 16.4477

CAGE analysis