Hb_000915_170

Information

Type transcription factor
Description TF Family: NAC
Location Contig915: 144459-146348
Sequence    

Annotation

kegg
ID vvi:100243701
description NAC domain-containing protein 7
nr
ID XP_010649056.1
description PREDICTED: NAC domain-containing protein 7 isoform X1 [Vitis vinifera]
swissprot
ID Q9SL41
description NAC domain-containing protein 37 OS=Arabidopsis thaliana GN=NAC037 PE=1 SV=1
trembl
ID B9SZU8
description NAC domain-containing protein, putative OS=Ricinus communis GN=RCOM_0292300 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nac domain-containing protein 7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62227: 145506-145705 , PASA_asmbl_62228: 144988-145765
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000915_170 0.0 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 isoform X1 [Vitis vinifera]
2 Hb_006816_380 0.0617469728 - - PREDICTED: kinesin-4-like [Jatropha curcas]
3 Hb_000358_260 0.0648912795 - - PREDICTED: lachrymatory-factor synthase-like [Vitis vinifera]
4 Hb_007904_150 0.0696671383 - - PREDICTED: probable pectate lyase 5 [Populus euphratica]
5 Hb_001981_050 0.0713006331 - - PREDICTED: aldehyde dehydrogenase family 3 member F1-like [Jatropha curcas]
6 Hb_002740_050 0.0768570166 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86-like [Populus euphratica]
7 Hb_185811_010 0.0794076529 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
8 Hb_000928_030 0.0803262829 transcription factor TF Family: bZIP PREDICTED: protein ABSCISIC ACID-INSENSITIVE 5 [Jatropha curcas]
9 Hb_000318_310 0.0808275591 - - hypothetical protein POPTR_0009s11190g [Populus trichocarpa]
10 Hb_006588_140 0.0836776806 - - PREDICTED: uncharacterized protein LOC104906772 [Beta vulgaris subsp. vulgaris]
11 Hb_000103_200 0.0845495612 - - calmodulin binding protein, putative [Ricinus communis]
12 Hb_126714_010 0.0848180873 - - hypothetical protein CISIN_1g041016mg, partial [Citrus sinensis]
13 Hb_003855_060 0.084855915 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
14 Hb_002119_100 0.0851652271 - - cytochrome B561, putative [Ricinus communis]
15 Hb_003723_050 0.0884651054 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000232_040 0.0899241432 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 86 isoform X2 [Populus euphratica]
17 Hb_166718_010 0.0917576173 - - heat-shock protein, putative [Ricinus communis]
18 Hb_005833_010 0.0931077964 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Jatropha curcas]
19 Hb_052530_020 0.0931721855 - - cytochrome B5 isoform 1, putative [Ricinus communis]
20 Hb_189208_070 0.0952299573 - - 10-deacetylbaccatin III 10-O-acetyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000915_170 Hb_000915_170 Hb_006816_380 Hb_006816_380 Hb_000915_170--Hb_006816_380 Hb_000358_260 Hb_000358_260 Hb_000915_170--Hb_000358_260 Hb_007904_150 Hb_007904_150 Hb_000915_170--Hb_007904_150 Hb_001981_050 Hb_001981_050 Hb_000915_170--Hb_001981_050 Hb_002740_050 Hb_002740_050 Hb_000915_170--Hb_002740_050 Hb_185811_010 Hb_185811_010 Hb_000915_170--Hb_185811_010 Hb_012395_240 Hb_012395_240 Hb_006816_380--Hb_012395_240 Hb_006816_380--Hb_000358_260 Hb_000928_030 Hb_000928_030 Hb_006816_380--Hb_000928_030 Hb_052530_020 Hb_052530_020 Hb_006816_380--Hb_052530_020 Hb_000103_200 Hb_000103_200 Hb_006816_380--Hb_000103_200 Hb_010577_020 Hb_010577_020 Hb_000358_260--Hb_010577_020 Hb_005833_010 Hb_005833_010 Hb_000358_260--Hb_005833_010 Hb_056506_040 Hb_056506_040 Hb_000358_260--Hb_056506_040 Hb_000358_260--Hb_000928_030 Hb_003855_060 Hb_003855_060 Hb_007904_150--Hb_003855_060 Hb_007904_150--Hb_002740_050 Hb_007904_150--Hb_001981_050 Hb_000318_310 Hb_000318_310 Hb_007904_150--Hb_000318_310 Hb_007904_150--Hb_185811_010 Hb_001981_050--Hb_185811_010 Hb_001981_050--Hb_000318_310 Hb_001981_050--Hb_003855_060 Hb_004459_010 Hb_004459_010 Hb_001981_050--Hb_004459_010 Hb_000917_300 Hb_000917_300 Hb_001981_050--Hb_000917_300 Hb_002740_050--Hb_003855_060 Hb_143629_170 Hb_143629_170 Hb_002740_050--Hb_143629_170 Hb_002119_100 Hb_002119_100 Hb_002740_050--Hb_002119_100 Hb_149694_010 Hb_149694_010 Hb_002740_050--Hb_149694_010 Hb_000329_780 Hb_000329_780 Hb_002740_050--Hb_000329_780 Hb_185811_010--Hb_000318_310 Hb_001345_050 Hb_001345_050 Hb_185811_010--Hb_001345_050 Hb_072771_010 Hb_072771_010 Hb_185811_010--Hb_072771_010 Hb_004807_010 Hb_004807_010 Hb_185811_010--Hb_004807_010 Hb_185811_010--Hb_003855_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.036387 0.151384 6.05899 8.99508 0.0340925 0.0191807
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0326953 0 0.0262047 8.51599

CAGE analysis