Hb_000915_180

Information

Type -
Description -
Location Contig915: 158988-161830
Sequence    

Annotation

kegg
ID pxb:103928202
description V-type proton ATPase 16 kDa proteolipid subunit-like
nr
ID XP_009335490.1
description PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Pyrus x bretschneideri]
swissprot
ID Q96473
description V-type proton ATPase 16 kDa proteolipid subunit OS=Kalanchoe daigremontiana PE=2 SV=1
trembl
ID A0A0D3DQH4
description Uncharacterized protein (Fragment) OS=Brassica oleracea var. oleracea PE=4 SV=1
Gene Ontology
ID GO:0000220
description v-type proton atpase 16 kda proteolipid subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62230: 159113-161769
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000915_180 0.0 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Pyrus x bretschneideri]
2 Hb_013358_040 0.0585030689 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
3 Hb_001195_530 0.0602068579 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000069_310 0.0614033372 - - ubiquitin ligase [Cucumis melo subsp. melo]
5 Hb_021419_030 0.061878701 - - hypothetical protein glysoja_023295 [Glycine soja]
6 Hb_001408_140 0.0645453994 - - hypothetical protein JCGZ_00234 [Jatropha curcas]
7 Hb_000331_680 0.0667148848 - - Protein bem46, putative [Ricinus communis]
8 Hb_020831_030 0.0669998584 - - conserved hypothetical protein [Ricinus communis]
9 Hb_013399_100 0.0674253298 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000732_010 0.0682742714 - - PREDICTED: nitric oxide synthase-interacting protein [Pyrus x bretschneideri]
11 Hb_003001_080 0.0688826622 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
12 Hb_007007_120 0.0691994775 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
13 Hb_000866_460 0.0715633705 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic-like [Jatropha curcas]
14 Hb_000327_270 0.0722527702 - - PREDICTED: leukocyte receptor cluster member 8 homolog isoform X1 [Jatropha curcas]
15 Hb_003464_090 0.0728217273 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
16 Hb_001409_020 0.0734902213 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105638648 [Jatropha curcas]
17 Hb_011995_010 0.0736236916 - - dc50, putative [Ricinus communis]
18 Hb_000077_140 0.0738334417 - - structural constituent of cell wall, putative [Ricinus communis]
19 Hb_003861_050 0.0740521374 - - PREDICTED: uncharacterized protein LOC105650779 [Jatropha curcas]
20 Hb_010381_090 0.074303915 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000915_180 Hb_000915_180 Hb_013358_040 Hb_013358_040 Hb_000915_180--Hb_013358_040 Hb_001195_530 Hb_001195_530 Hb_000915_180--Hb_001195_530 Hb_000069_310 Hb_000069_310 Hb_000915_180--Hb_000069_310 Hb_021419_030 Hb_021419_030 Hb_000915_180--Hb_021419_030 Hb_001408_140 Hb_001408_140 Hb_000915_180--Hb_001408_140 Hb_000331_680 Hb_000331_680 Hb_000915_180--Hb_000331_680 Hb_013358_040--Hb_000069_310 Hb_164010_040 Hb_164010_040 Hb_013358_040--Hb_164010_040 Hb_002073_200 Hb_002073_200 Hb_013358_040--Hb_002073_200 Hb_003428_010 Hb_003428_010 Hb_013358_040--Hb_003428_010 Hb_000869_080 Hb_000869_080 Hb_013358_040--Hb_000869_080 Hb_020831_030 Hb_020831_030 Hb_001195_530--Hb_020831_030 Hb_105105_010 Hb_105105_010 Hb_001195_530--Hb_105105_010 Hb_003640_040 Hb_003640_040 Hb_001195_530--Hb_003640_040 Hb_001195_530--Hb_001408_140 Hb_002056_090 Hb_002056_090 Hb_001195_530--Hb_002056_090 Hb_002205_250 Hb_002205_250 Hb_001195_530--Hb_002205_250 Hb_003849_110 Hb_003849_110 Hb_000069_310--Hb_003849_110 Hb_002818_030 Hb_002818_030 Hb_000069_310--Hb_002818_030 Hb_001473_160 Hb_001473_160 Hb_000069_310--Hb_001473_160 Hb_000069_310--Hb_000331_680 Hb_021419_030--Hb_001408_140 Hb_123915_040 Hb_123915_040 Hb_021419_030--Hb_123915_040 Hb_000905_110 Hb_000905_110 Hb_021419_030--Hb_000905_110 Hb_000340_530 Hb_000340_530 Hb_021419_030--Hb_000340_530 Hb_000336_210 Hb_000336_210 Hb_021419_030--Hb_000336_210 Hb_001408_140--Hb_105105_010 Hb_003464_090 Hb_003464_090 Hb_001408_140--Hb_003464_090 Hb_093458_040 Hb_093458_040 Hb_001408_140--Hb_093458_040 Hb_001408_140--Hb_000340_530 Hb_000077_140 Hb_000077_140 Hb_000331_680--Hb_000077_140 Hb_005653_090 Hb_005653_090 Hb_000331_680--Hb_005653_090 Hb_000331_680--Hb_003464_090 Hb_002890_290 Hb_002890_290 Hb_000331_680--Hb_002890_290 Hb_000327_270 Hb_000327_270 Hb_000331_680--Hb_000327_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.4057 64.2262 62.551 57.4828 64.0144 51.2139
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
59.5706 49.8613 61.7388 42.4252 48.9784

CAGE analysis