Hb_000916_070

Information

Type -
Description -
Location Contig916: 138619-141041
Sequence    

Annotation

kegg
ID rcu:RCOM_0658930
description protein binding protein, putative
nr
ID XP_012080840.1
description PREDICTED: sister chromatid cohesion protein DCC1-like [Jatropha curcas]
swissprot
ID Q66I84
description Sister chromatid cohesion protein DCC1 OS=Danio rerio GN=dscc1 PE=2 SV=1
trembl
ID A0A067KEG2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16205 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62266: 138480-139088
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000916_070 0.0 - - PREDICTED: sister chromatid cohesion protein DCC1-like [Jatropha curcas]
2 Hb_002960_150 0.0898582271 - - hypothetical protein CISIN_1g029215mg [Citrus sinensis]
3 Hb_000622_130 0.1013321132 - - PREDICTED: tubulin gamma-1 chain [Vitis vinifera]
4 Hb_067130_010 0.1038147438 - - protein binding protein, putative [Ricinus communis]
5 Hb_124373_010 0.109108029 - - PREDICTED: BRCA1-A complex subunit BRE isoform X1 [Jatropha curcas]
6 Hb_010368_050 0.1117318505 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
7 Hb_003001_090 0.1125265063 - - PREDICTED: uncharacterized protein LOC105644365 [Jatropha curcas]
8 Hb_012796_020 0.1134609986 - - PREDICTED: ADP-ribosylation factor 1 [Prunus mume]
9 Hb_000152_600 0.1156324534 - - PREDICTED: protein jagunal homolog 1 [Jatropha curcas]
10 Hb_019181_030 0.1161772565 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 6-like [Pyrus x bretschneideri]
11 Hb_011282_060 0.1189776905 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase 1 [Jatropha curcas]
12 Hb_005054_080 0.1195499087 transcription factor TF Family: LIM Pollen-specific protein SF3, putative [Ricinus communis]
13 Hb_052805_010 0.1195938914 - - hypothetical protein POPTR_0009s03650g [Populus trichocarpa]
14 Hb_010381_010 0.1200603139 - - WD-repeat protein, putative [Ricinus communis]
15 Hb_001699_100 0.120250257 - - PREDICTED: calmodulin-lysine N-methyltransferase [Jatropha curcas]
16 Hb_006570_160 0.1210402357 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
17 Hb_000720_040 0.1224534624 - - PREDICTED: replication factor C subunit 2 [Jatropha curcas]
18 Hb_000331_090 0.1226477335 - - hypothetical protein PRUPE_ppa010923mg [Prunus persica]
19 Hb_001085_260 0.1236984409 - - PREDICTED: uncharacterized protein LOC105633184 [Jatropha curcas]
20 Hb_161574_020 0.1247434077 - - PREDICTED: ubiquitin fusion degradation protein 1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000916_070 Hb_000916_070 Hb_002960_150 Hb_002960_150 Hb_000916_070--Hb_002960_150 Hb_000622_130 Hb_000622_130 Hb_000916_070--Hb_000622_130 Hb_067130_010 Hb_067130_010 Hb_000916_070--Hb_067130_010 Hb_124373_010 Hb_124373_010 Hb_000916_070--Hb_124373_010 Hb_010368_050 Hb_010368_050 Hb_000916_070--Hb_010368_050 Hb_003001_090 Hb_003001_090 Hb_000916_070--Hb_003001_090 Hb_001085_260 Hb_001085_260 Hb_002960_150--Hb_001085_260 Hb_002960_150--Hb_124373_010 Hb_007017_080 Hb_007017_080 Hb_002960_150--Hb_007017_080 Hb_002960_150--Hb_000622_130 Hb_002960_150--Hb_010368_050 Hb_000152_600 Hb_000152_600 Hb_000622_130--Hb_000152_600 Hb_001191_080 Hb_001191_080 Hb_000622_130--Hb_001191_080 Hb_000832_190 Hb_000832_190 Hb_000622_130--Hb_000832_190 Hb_005914_110 Hb_005914_110 Hb_000622_130--Hb_005914_110 Hb_000926_200 Hb_000926_200 Hb_000622_130--Hb_000926_200 Hb_000331_090 Hb_000331_090 Hb_067130_010--Hb_000331_090 Hb_000720_040 Hb_000720_040 Hb_067130_010--Hb_000720_040 Hb_011282_060 Hb_011282_060 Hb_067130_010--Hb_011282_060 Hb_052805_010 Hb_052805_010 Hb_067130_010--Hb_052805_010 Hb_000107_230 Hb_000107_230 Hb_067130_010--Hb_000107_230 Hb_000130_270 Hb_000130_270 Hb_124373_010--Hb_000130_270 Hb_000207_150 Hb_000207_150 Hb_124373_010--Hb_000207_150 Hb_003929_170 Hb_003929_170 Hb_124373_010--Hb_003929_170 Hb_124373_010--Hb_000152_600 Hb_001951_130 Hb_001951_130 Hb_010368_050--Hb_001951_130 Hb_000127_140 Hb_000127_140 Hb_010368_050--Hb_000127_140 Hb_019181_030 Hb_019181_030 Hb_010368_050--Hb_019181_030 Hb_010407_140 Hb_010407_140 Hb_010368_050--Hb_010407_140 Hb_000392_340 Hb_000392_340 Hb_010368_050--Hb_000392_340 Hb_083380_020 Hb_083380_020 Hb_010368_050--Hb_083380_020 Hb_003001_090--Hb_007017_080 Hb_001124_070 Hb_001124_070 Hb_003001_090--Hb_001124_070 Hb_003001_090--Hb_002960_150 Hb_010381_010 Hb_010381_010 Hb_003001_090--Hb_010381_010 Hb_000227_190 Hb_000227_190 Hb_003001_090--Hb_000227_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.985204 0.632922 2.65487 3.37022 1.1629 1.34438
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.03294 1.8469 1.15656 1.15991 0.61816

CAGE analysis