Hb_000917_060

Information

Type -
Description -
Location Contig917: 30433-33327
Sequence    

Annotation

kegg
ID pop:POPTR_0007s14800g
description POPTRDRAFT_869308; hypothetical protein
nr
ID XP_012079436.1
description PREDICTED: GTP-binding protein At2g22870 [Jatropha curcas]
swissprot
ID O81004
description GTP-binding protein At2g22870 OS=Arabidopsis thaliana GN=EMB2001 PE=2 SV=2
trembl
ID A0A067K7J6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12558 PE=3 SV=1
Gene Ontology
ID GO:0005525
description gtp-binding protein at2g22870

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62271: 30549-32539 , PASA_asmbl_62272: 30572-32339 , PASA_asmbl_62273: 33147-33407
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000917_060 0.0 - - PREDICTED: GTP-binding protein At2g22870 [Jatropha curcas]
2 Hb_000866_260 0.0526292928 - - PREDICTED: F-box/kelch-repeat protein SKIP4 isoform X1 [Jatropha curcas]
3 Hb_000329_320 0.0644863154 - - PREDICTED: DNA ligase 1 [Jatropha curcas]
4 Hb_017358_030 0.0678875042 transcription factor TF Family: FAR1 conserved hypothetical protein [Ricinus communis]
5 Hb_032202_140 0.0680766417 - - PREDICTED: flap endonuclease GEN-like 1 [Jatropha curcas]
6 Hb_001163_050 0.0743907068 - - PREDICTED: histone deacetylase 9 [Jatropha curcas]
7 Hb_002013_020 0.074452203 - - PREDICTED: uncharacterized protein LOC105641613 [Jatropha curcas]
8 Hb_000866_010 0.0747863251 - - conserved hypothetical protein [Ricinus communis]
9 Hb_027295_050 0.0757233436 - - PREDICTED: pentatricopeptide repeat-containing protein At5g48730, chloroplastic [Jatropha curcas]
10 Hb_000010_400 0.0774996845 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
11 Hb_000205_190 0.0780001803 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
12 Hb_000453_050 0.0807277416 - - PREDICTED: methyl-CpG-binding domain-containing protein 5-like [Jatropha curcas]
13 Hb_011995_010 0.0814050892 - - dc50, putative [Ricinus communis]
14 Hb_011519_010 0.0828787382 - - PREDICTED: uncharacterized protein LOC105645310 [Jatropha curcas]
15 Hb_007389_010 0.0831791242 - - PREDICTED: THO complex subunit 7A [Jatropha curcas]
16 Hb_003052_190 0.08427779 - - PREDICTED: uncharacterized protein LOC105641937 isoform X2 [Jatropha curcas]
17 Hb_004208_030 0.0852943723 transcription factor TF Family: MYB-related PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
18 Hb_001158_070 0.0860000284 - - Protein DEK, putative [Ricinus communis]
19 Hb_008165_060 0.0871724015 - - PREDICTED: uncharacterized protein LOC105635541 [Jatropha curcas]
20 Hb_000753_240 0.0877826386 - - PREDICTED: ADP,ATP carrier protein ER-ANT1 [Jatropha curcas]

Gene co-expression network

sample Hb_000917_060 Hb_000917_060 Hb_000866_260 Hb_000866_260 Hb_000917_060--Hb_000866_260 Hb_000329_320 Hb_000329_320 Hb_000917_060--Hb_000329_320 Hb_017358_030 Hb_017358_030 Hb_000917_060--Hb_017358_030 Hb_032202_140 Hb_032202_140 Hb_000917_060--Hb_032202_140 Hb_001163_050 Hb_001163_050 Hb_000917_060--Hb_001163_050 Hb_002013_020 Hb_002013_020 Hb_000917_060--Hb_002013_020 Hb_007389_010 Hb_007389_010 Hb_000866_260--Hb_007389_010 Hb_000866_260--Hb_017358_030 Hb_000866_260--Hb_002013_020 Hb_000866_260--Hb_000329_320 Hb_000753_240 Hb_000753_240 Hb_000866_260--Hb_000753_240 Hb_032264_070 Hb_032264_070 Hb_000329_320--Hb_032264_070 Hb_005269_070 Hb_005269_070 Hb_000329_320--Hb_005269_070 Hb_002490_020 Hb_002490_020 Hb_000329_320--Hb_002490_020 Hb_000883_020 Hb_000883_020 Hb_000329_320--Hb_000883_020 Hb_000165_250 Hb_000165_250 Hb_017358_030--Hb_000165_250 Hb_017358_030--Hb_007389_010 Hb_002739_100 Hb_002739_100 Hb_017358_030--Hb_002739_100 Hb_000029_050 Hb_000029_050 Hb_017358_030--Hb_000029_050 Hb_002600_020 Hb_002600_020 Hb_032202_140--Hb_002600_020 Hb_032202_140--Hb_002013_020 Hb_032202_140--Hb_001163_050 Hb_003001_080 Hb_003001_080 Hb_032202_140--Hb_003001_080 Hb_001456_060 Hb_001456_060 Hb_032202_140--Hb_001456_060 Hb_011995_010 Hb_011995_010 Hb_032202_140--Hb_011995_010 Hb_000331_550 Hb_000331_550 Hb_001163_050--Hb_000331_550 Hb_003125_120 Hb_003125_120 Hb_001163_050--Hb_003125_120 Hb_000373_070 Hb_000373_070 Hb_001163_050--Hb_000373_070 Hb_001142_030 Hb_001142_030 Hb_001163_050--Hb_001142_030 Hb_001163_050--Hb_003001_080 Hb_008453_140 Hb_008453_140 Hb_001163_050--Hb_008453_140 Hb_004052_080 Hb_004052_080 Hb_002013_020--Hb_004052_080 Hb_003513_010 Hb_003513_010 Hb_002013_020--Hb_003513_010 Hb_002013_020--Hb_001456_060 Hb_002013_020--Hb_001163_050 Hb_002876_230 Hb_002876_230 Hb_002013_020--Hb_002876_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.4981 9.16247 13.5629 6.27055 11.1204 9.34809
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.79686 14.6632 15.7975 7.89722 10.4408

CAGE analysis