Hb_000917_100

Information

Type -
Description -
Location Contig917: 134544-146315
Sequence    

Annotation

kegg
ID tcc:TCM_011892
description Phosphoenolpyruvate carboxylase 4 isoform 1
nr
ID XP_012082005.1
description PREDICTED: phosphoenolpyruvate carboxylase 4 [Jatropha curcas]
swissprot
ID Q8GVE8
description Phosphoenolpyruvate carboxylase 4 OS=Arabidopsis thaliana GN=PPC4 PE=2 SV=1
trembl
ID A0A067JZN9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18263 PE=3 SV=1
Gene Ontology
ID GO:0008964
description phosphoenolpyruvate carboxylase 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62275: 134624-146274
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000917_100 0.0 - - PREDICTED: phosphoenolpyruvate carboxylase 4 [Jatropha curcas]
2 Hb_002005_120 0.0789460124 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]
3 Hb_000866_080 0.0839457946 - - PREDICTED: signal peptide peptidase-like 4 isoform X1 [Jatropha curcas]
4 Hb_002016_060 0.0842632598 - - PREDICTED: uncharacterized protein LOC105642502 [Jatropha curcas]
5 Hb_015183_100 0.0920659003 - - PREDICTED: ankyrin repeat-containing protein At3g12360 [Jatropha curcas]
6 Hb_002092_070 0.0971451954 - - PREDICTED: aluminum-activated malate transporter 9-like [Jatropha curcas]
7 Hb_001221_090 0.0999290183 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
8 Hb_014720_020 0.1002105538 - - PREDICTED: serine/threonine-protein kinase ATM [Jatropha curcas]
9 Hb_004162_120 0.1038669538 - - PREDICTED: vacuolar protein sorting-associated protein 41 homolog [Populus euphratica]
10 Hb_003895_020 0.1047639651 - - PREDICTED: dedicator of cytokinesis protein 7 isoform X2 [Jatropha curcas]
11 Hb_004310_040 0.1065622704 - - conserved hypothetical protein [Ricinus communis]
12 Hb_011202_030 0.1072003753 - - arsenite-resistance protein, putative [Ricinus communis]
13 Hb_001989_050 0.1087596607 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 5 [Jatropha curcas]
14 Hb_001492_040 0.1107324251 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
15 Hb_000751_140 0.1127153305 - - PREDICTED: clathrin interactor EPSIN 2 [Jatropha curcas]
16 Hb_002045_250 0.1127223316 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP63 isoform X3 [Jatropha curcas]
17 Hb_000117_070 0.112794293 - - PREDICTED: branchpoint-bridging protein [Jatropha curcas]
18 Hb_002005_030 0.113743776 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
19 Hb_003120_070 0.1139383499 - - ATP binding protein, putative [Ricinus communis]
20 Hb_001341_160 0.1149990213 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000917_100 Hb_000917_100 Hb_002005_120 Hb_002005_120 Hb_000917_100--Hb_002005_120 Hb_000866_080 Hb_000866_080 Hb_000917_100--Hb_000866_080 Hb_002016_060 Hb_002016_060 Hb_000917_100--Hb_002016_060 Hb_015183_100 Hb_015183_100 Hb_000917_100--Hb_015183_100 Hb_002092_070 Hb_002092_070 Hb_000917_100--Hb_002092_070 Hb_001221_090 Hb_001221_090 Hb_000917_100--Hb_001221_090 Hb_014720_020 Hb_014720_020 Hb_002005_120--Hb_014720_020 Hb_065500_030 Hb_065500_030 Hb_002005_120--Hb_065500_030 Hb_003604_050 Hb_003604_050 Hb_002005_120--Hb_003604_050 Hb_002005_120--Hb_002016_060 Hb_003120_070 Hb_003120_070 Hb_002005_120--Hb_003120_070 Hb_003895_020 Hb_003895_020 Hb_000866_080--Hb_003895_020 Hb_011249_060 Hb_011249_060 Hb_000866_080--Hb_011249_060 Hb_000866_080--Hb_015183_100 Hb_000300_250 Hb_000300_250 Hb_000866_080--Hb_000300_250 Hb_004310_040 Hb_004310_040 Hb_000866_080--Hb_004310_040 Hb_002016_060--Hb_015183_100 Hb_002016_060--Hb_004310_040 Hb_002016_060--Hb_000866_080 Hb_000059_020 Hb_000059_020 Hb_002016_060--Hb_000059_020 Hb_003142_040 Hb_003142_040 Hb_015183_100--Hb_003142_040 Hb_001171_030 Hb_001171_030 Hb_015183_100--Hb_001171_030 Hb_015183_100--Hb_011249_060 Hb_002968_070 Hb_002968_070 Hb_015183_100--Hb_002968_070 Hb_012940_040 Hb_012940_040 Hb_015183_100--Hb_012940_040 Hb_001341_160 Hb_001341_160 Hb_015183_100--Hb_001341_160 Hb_002045_250 Hb_002045_250 Hb_002092_070--Hb_002045_250 Hb_004429_010 Hb_004429_010 Hb_002092_070--Hb_004429_010 Hb_002284_170 Hb_002284_170 Hb_002092_070--Hb_002284_170 Hb_002092_070--Hb_001221_090 Hb_009252_050 Hb_009252_050 Hb_002092_070--Hb_009252_050 Hb_000958_150 Hb_000958_150 Hb_002092_070--Hb_000958_150 Hb_001221_090--Hb_003142_040 Hb_001221_090--Hb_004429_010 Hb_011202_030 Hb_011202_030 Hb_001221_090--Hb_011202_030 Hb_001904_030 Hb_001904_030 Hb_001221_090--Hb_001904_030 Hb_002461_020 Hb_002461_020 Hb_001221_090--Hb_002461_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.9328 59.4449 27.0058 30.7612 23.1087 22.2977
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.1859 2.87417 5.26738 29.5896 27.7073

CAGE analysis