Hb_000917_110

Information

Type -
Description -
Location Contig917: 153347-154452
Sequence    

Annotation

kegg
ID tcc:TCM_011890
description Nudix hydrolase 1
nr
ID XP_012082006.1
description PREDICTED: nudix hydrolase 1 [Jatropha curcas]
swissprot
ID Q9CA40
description Nudix hydrolase 1 OS=Arabidopsis thaliana GN=NUDT1 PE=1 SV=1
trembl
ID A0A067K2T5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18264 PE=4 SV=1
Gene Ontology
ID GO:0005829
description nudix hydrolase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62277: 153663-154442
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000917_110 0.0 - - PREDICTED: nudix hydrolase 1 [Jatropha curcas]
2 Hb_046049_010 0.0785384429 - - PREDICTED: far upstream element-binding protein 2 isoform X3 [Jatropha curcas]
3 Hb_009793_010 0.0836287438 - - hypothetical protein JCGZ_17222 [Jatropha curcas]
4 Hb_114893_030 0.0837163277 - - PREDICTED: ribosome-recycling factor, chloroplastic [Jatropha curcas]
5 Hb_000007_100 0.0852348718 - - PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
6 Hb_004800_230 0.0918691495 - - PREDICTED: MIP18 family protein At1g68310 [Jatropha curcas]
7 Hb_015279_010 0.0920701046 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
8 Hb_005045_060 0.0926985021 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial [Jatropha curcas]
9 Hb_000380_190 0.0937796354 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
10 Hb_000012_220 0.0938614366 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002868_010 0.0944239431 - - 60S ribosomal protein L30, putative [Ricinus communis]
12 Hb_000487_250 0.0944418344 - - 60S ribosomal protein L27e, putative [Ricinus communis]
13 Hb_001159_140 0.0960725978 - - hypothetical protein POPTR_0001s08090g [Populus trichocarpa]
14 Hb_000698_030 0.0969369298 - - PREDICTED: 60S ribosomal protein L8 [Jatropha curcas]
15 Hb_002518_080 0.0971028969 - - PREDICTED: uncharacterized protein LOC105639837 [Jatropha curcas]
16 Hb_002518_050 0.0975993476 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
17 Hb_001314_100 0.0976075782 - - hypothetical protein POPTR_0001s01820g [Populus trichocarpa]
18 Hb_002311_350 0.0976592503 - - PREDICTED: 60S ribosomal protein L19-3 [Jatropha curcas]
19 Hb_001818_020 0.0978960281 - - PREDICTED: 60S ribosomal protein L21-1 [Phoenix dactylifera]
20 Hb_001269_630 0.098237518 - - PREDICTED: uncharacterized protein LOC105630301 [Jatropha curcas]

Gene co-expression network

sample Hb_000917_110 Hb_000917_110 Hb_046049_010 Hb_046049_010 Hb_000917_110--Hb_046049_010 Hb_009793_010 Hb_009793_010 Hb_000917_110--Hb_009793_010 Hb_114893_030 Hb_114893_030 Hb_000917_110--Hb_114893_030 Hb_000007_100 Hb_000007_100 Hb_000917_110--Hb_000007_100 Hb_004800_230 Hb_004800_230 Hb_000917_110--Hb_004800_230 Hb_015279_010 Hb_015279_010 Hb_000917_110--Hb_015279_010 Hb_064264_010 Hb_064264_010 Hb_046049_010--Hb_064264_010 Hb_046049_010--Hb_004800_230 Hb_002868_010 Hb_002868_010 Hb_046049_010--Hb_002868_010 Hb_001946_210 Hb_001946_210 Hb_046049_010--Hb_001946_210 Hb_002660_080 Hb_002660_080 Hb_046049_010--Hb_002660_080 Hb_009793_010--Hb_000007_100 Hb_000926_300 Hb_000926_300 Hb_009793_010--Hb_000926_300 Hb_001814_050 Hb_001814_050 Hb_009793_010--Hb_001814_050 Hb_000152_420 Hb_000152_420 Hb_009793_010--Hb_000152_420 Hb_000707_030 Hb_000707_030 Hb_009793_010--Hb_000707_030 Hb_009554_010 Hb_009554_010 Hb_009793_010--Hb_009554_010 Hb_002518_080 Hb_002518_080 Hb_114893_030--Hb_002518_080 Hb_022425_040 Hb_022425_040 Hb_114893_030--Hb_022425_040 Hb_000258_350 Hb_000258_350 Hb_114893_030--Hb_000258_350 Hb_000127_180 Hb_000127_180 Hb_114893_030--Hb_000127_180 Hb_114893_030--Hb_015279_010 Hb_000007_100--Hb_000926_300 Hb_000926_250 Hb_000926_250 Hb_000007_100--Hb_000926_250 Hb_000380_190 Hb_000380_190 Hb_000007_100--Hb_000380_190 Hb_002284_240 Hb_002284_240 Hb_000007_100--Hb_002284_240 Hb_003599_040 Hb_003599_040 Hb_000007_100--Hb_003599_040 Hb_000329_030 Hb_000329_030 Hb_004800_230--Hb_000329_030 Hb_024071_020 Hb_024071_020 Hb_004800_230--Hb_024071_020 Hb_000163_160 Hb_000163_160 Hb_004800_230--Hb_000163_160 Hb_003126_050 Hb_003126_050 Hb_004800_230--Hb_003126_050 Hb_000494_020 Hb_000494_020 Hb_004800_230--Hb_000494_020 Hb_001184_090 Hb_001184_090 Hb_004800_230--Hb_001184_090 Hb_015279_010--Hb_022425_040 Hb_003787_010 Hb_003787_010 Hb_015279_010--Hb_003787_010 Hb_000667_070 Hb_000667_070 Hb_015279_010--Hb_000667_070 Hb_004116_190 Hb_004116_190 Hb_015279_010--Hb_004116_190 Hb_000920_110 Hb_000920_110 Hb_015279_010--Hb_000920_110 Hb_011671_100 Hb_011671_100 Hb_015279_010--Hb_011671_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.5174 5.09219 5.39773 6.68916 8.20095 9.82775
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.7626 22.3846 9.2758 7.79225 1.51428

CAGE analysis