Hb_000917_160

Information

Type -
Description -
Location Contig917: 184199-190791
Sequence    

Annotation

kegg
ID rcu:RCOM_0704510
description protein binding protein, putative
nr
ID XP_012082014.1
description PREDICTED: protein decapping 5 isoform X1 [Jatropha curcas]
swissprot
ID Q9C658
description Protein decapping 5 OS=Arabidopsis thaliana GN=DCP5 PE=1 SV=1
trembl
ID A0A067K2T9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18269 PE=4 SV=1
Gene Ontology
ID GO:0005829
description protein decapping 5-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62281: 184134-190429 , PASA_asmbl_62282: 184208-190429
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000917_160 0.0 - - PREDICTED: protein decapping 5 isoform X1 [Jatropha curcas]
2 Hb_000062_470 0.0458017423 - - PREDICTED: cyclin-dependent kinase G-2 [Jatropha curcas]
3 Hb_000191_130 0.0476507075 - - PREDICTED: RNA polymerase-associated protein CTR9 homolog [Jatropha curcas]
4 Hb_118840_050 0.0639660244 - - hypothetical protein CISIN_1g0019781mg, partial [Citrus sinensis]
5 Hb_000406_230 0.0664076976 - - PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]
6 Hb_007558_070 0.0670939616 - - PREDICTED: pre-mRNA-processing factor 39 isoform X2 [Jatropha curcas]
7 Hb_010417_060 0.0672442453 - - PREDICTED: protein SGT1 homolog A-like [Jatropha curcas]
8 Hb_001021_200 0.0681689361 desease resistance Gene Name: AAA PREDICTED: peroxisome biogenesis protein 6 [Jatropha curcas]
9 Hb_000960_050 0.0689872943 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
10 Hb_000577_030 0.0711560236 - - Ubiquitin carboxyl-terminal hydrolase 12 -like protein [Gossypium arboreum]
11 Hb_003124_160 0.0723161143 - - dynamin, putative [Ricinus communis]
12 Hb_001033_050 0.0730897559 - - PREDICTED: acetylornithine deacetylase [Jatropha curcas]
13 Hb_004429_160 0.0738414058 - - PREDICTED: serine/threonine-protein kinase TAO3 isoform X1 [Jatropha curcas]
14 Hb_000261_030 0.074564872 - - PREDICTED: uncharacterized protein LOC105633147 [Jatropha curcas]
15 Hb_000264_070 0.0754000793 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
16 Hb_032920_130 0.0756759564 - - PREDICTED: vacuolar-sorting receptor 3 [Jatropha curcas]
17 Hb_006618_090 0.0758281483 - - PREDICTED: FAM10 family protein At4g22670 [Jatropha curcas]
18 Hb_000661_200 0.0758844998 - - PREDICTED: uncharacterized protein LOC105648311 isoform X1 [Jatropha curcas]
19 Hb_000398_020 0.076475492 - - PREDICTED: superkiller viralicidic activity 2-like 2 isoform X1 [Jatropha curcas]
20 Hb_000230_090 0.0765838963 - - PREDICTED: WD repeat-containing protein 48 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000917_160 Hb_000917_160 Hb_000062_470 Hb_000062_470 Hb_000917_160--Hb_000062_470 Hb_000191_130 Hb_000191_130 Hb_000917_160--Hb_000191_130 Hb_118840_050 Hb_118840_050 Hb_000917_160--Hb_118840_050 Hb_000406_230 Hb_000406_230 Hb_000917_160--Hb_000406_230 Hb_007558_070 Hb_007558_070 Hb_000917_160--Hb_007558_070 Hb_010417_060 Hb_010417_060 Hb_000917_160--Hb_010417_060 Hb_000062_470--Hb_000191_130 Hb_000062_470--Hb_010417_060 Hb_000661_200 Hb_000661_200 Hb_000062_470--Hb_000661_200 Hb_004429_160 Hb_004429_160 Hb_000062_470--Hb_004429_160 Hb_007813_030 Hb_007813_030 Hb_000062_470--Hb_007813_030 Hb_000191_130--Hb_004429_160 Hb_000010_360 Hb_000010_360 Hb_000191_130--Hb_000010_360 Hb_000640_310 Hb_000640_310 Hb_000191_130--Hb_000640_310 Hb_000032_010 Hb_000032_010 Hb_000191_130--Hb_000032_010 Hb_118840_050--Hb_000191_130 Hb_118840_050--Hb_000062_470 Hb_000577_030 Hb_000577_030 Hb_118840_050--Hb_000577_030 Hb_000230_430 Hb_000230_430 Hb_118840_050--Hb_000230_430 Hb_001047_200 Hb_001047_200 Hb_118840_050--Hb_001047_200 Hb_023344_010 Hb_023344_010 Hb_000406_230--Hb_023344_010 Hb_000406_230--Hb_007558_070 Hb_000406_230--Hb_000010_360 Hb_000960_050 Hb_000960_050 Hb_000406_230--Hb_000960_050 Hb_000406_230--Hb_000191_130 Hb_007558_070--Hb_000191_130 Hb_007558_070--Hb_023344_010 Hb_000398_020 Hb_000398_020 Hb_007558_070--Hb_000398_020 Hb_007558_070--Hb_000010_360 Hb_032920_130 Hb_032920_130 Hb_010417_060--Hb_032920_130 Hb_002044_170 Hb_002044_170 Hb_010417_060--Hb_002044_170 Hb_010417_060--Hb_000191_130 Hb_000176_130 Hb_000176_130 Hb_010417_060--Hb_000176_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.1469 65.7305 39.6311 34.8152 60.4192 45.5691
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.5791 16.0932 16.3643 39.9613 34.8577

CAGE analysis