Hb_000917_220

Information

Type -
Description -
Location Contig917: 231958-232332
Sequence    

Annotation

kegg
ID pop:POPTR_0010s14050g
description POPTRDRAFT_566680; clavata3/esr-related 12 family protein
nr
ID XP_002314887.1
description clavata3/esr-related 12 family protein [Populus trichocarpa]
swissprot
ID Q29PU4
description CLAVATA3/ESR (CLE)-related protein 12 OS=Arabidopsis thaliana GN=CLE12 PE=2 SV=1
trembl
ID B9HWM5
description Clavata3/esr-related 12 family protein OS=Populus trichocarpa GN=POPTR_0010s14050g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000917_220 0.0 - - clavata3/esr-related 12 family protein [Populus trichocarpa]
2 Hb_003540_010 0.0266459098 - - -
3 Hb_174829_030 0.0570527695 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003216_010 0.0603637778 - - glycosyl hydrolase family protein [Populus trichocarpa]
5 Hb_178968_010 0.0697522739 - - hypothetical protein JCGZ_15830 [Jatropha curcas]
6 Hb_151027_010 0.0744837508 - - (+)-delta-cadinene synthase isozyme A, putative [Ricinus communis]
7 Hb_004137_090 0.0797923982 - - PREDICTED: tumor necrosis factor ligand superfamily member 6 [Populus euphratica]
8 Hb_000203_120 0.0814239613 - - conserved hypothetical protein [Ricinus communis]
9 Hb_166700_010 0.0822832243 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
10 Hb_001006_130 0.0823232297 - - PREDICTED: transcription factor bHLH111 [Jatropha curcas]
11 Hb_018671_010 0.0824601426 - - -
12 Hb_008727_090 0.0830382189 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Jatropha curcas]
13 Hb_000696_120 0.0845861793 - - PREDICTED: protein FD [Populus euphratica]
14 Hb_000224_020 0.0854573233 - - PREDICTED: uncharacterized protein LOC105640888 [Jatropha curcas]
15 Hb_000224_050 0.0866988225 - - conserved hypothetical protein [Ricinus communis]
16 Hb_010080_040 0.0880738268 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002186_120 0.0880948702 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X5 [Populus euphratica]
18 Hb_003561_020 0.0883308208 - - gulonolactone oxidase, putative [Ricinus communis]
19 Hb_000174_130 0.0910350318 - - flowering locus T-like protein [Fagus crenata]
20 Hb_000053_150 0.094305009 - - clavata3/esr-related 12 family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000917_220 Hb_000917_220 Hb_003540_010 Hb_003540_010 Hb_000917_220--Hb_003540_010 Hb_174829_030 Hb_174829_030 Hb_000917_220--Hb_174829_030 Hb_003216_010 Hb_003216_010 Hb_000917_220--Hb_003216_010 Hb_178968_010 Hb_178968_010 Hb_000917_220--Hb_178968_010 Hb_151027_010 Hb_151027_010 Hb_000917_220--Hb_151027_010 Hb_004137_090 Hb_004137_090 Hb_000917_220--Hb_004137_090 Hb_003540_010--Hb_003216_010 Hb_003540_010--Hb_178968_010 Hb_003540_010--Hb_174829_030 Hb_003540_010--Hb_004137_090 Hb_000053_150 Hb_000053_150 Hb_003540_010--Hb_000053_150 Hb_000696_120 Hb_000696_120 Hb_174829_030--Hb_000696_120 Hb_174829_030--Hb_003216_010 Hb_174829_030--Hb_151027_010 Hb_010080_040 Hb_010080_040 Hb_174829_030--Hb_010080_040 Hb_001006_080 Hb_001006_080 Hb_174829_030--Hb_001006_080 Hb_005057_020 Hb_005057_020 Hb_003216_010--Hb_005057_020 Hb_003216_010--Hb_000696_120 Hb_003216_010--Hb_178968_010 Hb_178968_010--Hb_000053_150 Hb_018671_010 Hb_018671_010 Hb_178968_010--Hb_018671_010 Hb_122079_010 Hb_122079_010 Hb_178968_010--Hb_122079_010 Hb_002186_120 Hb_002186_120 Hb_178968_010--Hb_002186_120 Hb_104362_020 Hb_104362_020 Hb_151027_010--Hb_104362_020 Hb_000174_130 Hb_000174_130 Hb_151027_010--Hb_000174_130 Hb_179367_010 Hb_179367_010 Hb_151027_010--Hb_179367_010 Hb_166700_010 Hb_166700_010 Hb_151027_010--Hb_166700_010 Hb_004652_040 Hb_004652_040 Hb_151027_010--Hb_004652_040 Hb_003561_020 Hb_003561_020 Hb_004137_090--Hb_003561_020 Hb_007290_010 Hb_007290_010 Hb_004137_090--Hb_007290_010 Hb_004137_090--Hb_178968_010 Hb_004137_090--Hb_003216_010 Hb_004137_090--Hb_000053_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.307102 0.407673 3.22947 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis