Hb_000917_230

Information

Type -
Description -
Location Contig917: 236199-240565
Sequence    

Annotation

kegg
ID rcu:RCOM_0704810
description Coiled-coil domain-containing protein, putative
nr
ID XP_012082019.1
description PREDICTED: coiled-coil domain-containing protein 130-like [Jatropha curcas]
swissprot
ID Q32PZ9
description Coiled-coil domain-containing protein 130 OS=Rattus norvegicus GN=Ccdc130 PE=2 SV=1
trembl
ID A0A067JZF7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18277 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62285: 226323-240472 , PASA_asmbl_62286: 236914-237133
cDNA
(Sanger)
(ID:Location)		 042_F06.ab1: 236541-239923

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000917_230 0.0 - - PREDICTED: coiled-coil domain-containing protein 130-like [Jatropha curcas]
2 Hb_112198_010 0.0686160106 - - PREDICTED: F-box protein SKIP22 [Jatropha curcas]
3 Hb_000078_120 0.0717387785 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
4 Hb_000856_010 0.0719211971 - - PREDICTED: uncharacterized protein LOC105640466 [Jatropha curcas]
5 Hb_003465_030 0.0719365714 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000521_240 0.0725566247 - - PREDICTED: uncharacterized protein LOC105650339 isoform X2 [Jatropha curcas]
7 Hb_005054_110 0.0727435481 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
8 Hb_000352_310 0.0732434149 - - hypothetical protein CISIN_1g0017891mg, partial [Citrus sinensis]
9 Hb_029243_030 0.0735093481 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
10 Hb_149985_010 0.0751851942 - - PREDICTED: transcription initiation factor IIB-2 [Cucumis sativus]
11 Hb_000574_450 0.076290387 - - PREDICTED: signal recognition particle 54 kDa protein 2 [Jatropha curcas]
12 Hb_000327_180 0.0772977745 - - PREDICTED: TBC1 domain family member 10B-like isoform X1 [Jatropha curcas]
13 Hb_004435_030 0.0780022646 - - PREDICTED: F-box protein SKIP22 [Jatropha curcas]
14 Hb_000029_140 0.0787465838 - - PREDICTED: putative GDP-L-fucose synthase 2 [Populus euphratica]
15 Hb_001716_040 0.078989562 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
16 Hb_001951_220 0.0794018602 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X5 [Jatropha curcas]
17 Hb_000487_270 0.0805373589 - - hypothetical protein JCGZ_22651 [Jatropha curcas]
18 Hb_010775_040 0.0806623782 - - PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Jatropha curcas]
19 Hb_004781_010 0.0807122063 - - PREDICTED: potassium transporter 11-like [Populus euphratica]
20 Hb_004157_050 0.0814726213 - - PREDICTED: uncharacterized protein LOC105628218 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000917_230 Hb_000917_230 Hb_112198_010 Hb_112198_010 Hb_000917_230--Hb_112198_010 Hb_000078_120 Hb_000078_120 Hb_000917_230--Hb_000078_120 Hb_000856_010 Hb_000856_010 Hb_000917_230--Hb_000856_010 Hb_003465_030 Hb_003465_030 Hb_000917_230--Hb_003465_030 Hb_000521_240 Hb_000521_240 Hb_000917_230--Hb_000521_240 Hb_005054_110 Hb_005054_110 Hb_000917_230--Hb_005054_110 Hb_004435_030 Hb_004435_030 Hb_112198_010--Hb_004435_030 Hb_003906_200 Hb_003906_200 Hb_112198_010--Hb_003906_200 Hb_004030_080 Hb_004030_080 Hb_112198_010--Hb_004030_080 Hb_000868_090 Hb_000868_090 Hb_112198_010--Hb_000868_090 Hb_005582_040 Hb_005582_040 Hb_112198_010--Hb_005582_040 Hb_006831_140 Hb_006831_140 Hb_000078_120--Hb_006831_140 Hb_002994_030 Hb_002994_030 Hb_000078_120--Hb_002994_030 Hb_000696_330 Hb_000696_330 Hb_000078_120--Hb_000696_330 Hb_002078_350 Hb_002078_350 Hb_000078_120--Hb_002078_350 Hb_011386_010 Hb_011386_010 Hb_000078_120--Hb_011386_010 Hb_000708_030 Hb_000708_030 Hb_000078_120--Hb_000708_030 Hb_012022_040 Hb_012022_040 Hb_000856_010--Hb_012022_040 Hb_000928_070 Hb_000928_070 Hb_000856_010--Hb_000928_070 Hb_000856_010--Hb_005054_110 Hb_004078_040 Hb_004078_040 Hb_000856_010--Hb_004078_040 Hb_000221_190 Hb_000221_190 Hb_000856_010--Hb_000221_190 Hb_000359_060 Hb_000359_060 Hb_000856_010--Hb_000359_060 Hb_001489_090 Hb_001489_090 Hb_003465_030--Hb_001489_090 Hb_000352_310 Hb_000352_310 Hb_003465_030--Hb_000352_310 Hb_001671_100 Hb_001671_100 Hb_003465_030--Hb_001671_100 Hb_000173_280 Hb_000173_280 Hb_003465_030--Hb_000173_280 Hb_001876_050 Hb_001876_050 Hb_003465_030--Hb_001876_050 Hb_001635_190 Hb_001635_190 Hb_000521_240--Hb_001635_190 Hb_002471_090 Hb_002471_090 Hb_000521_240--Hb_002471_090 Hb_001716_040 Hb_001716_040 Hb_000521_240--Hb_001716_040 Hb_010068_080 Hb_010068_080 Hb_000521_240--Hb_010068_080 Hb_011218_090 Hb_011218_090 Hb_000521_240--Hb_011218_090 Hb_005054_110--Hb_011386_010 Hb_000049_210 Hb_000049_210 Hb_005054_110--Hb_000049_210 Hb_000260_350 Hb_000260_350 Hb_005054_110--Hb_000260_350 Hb_149985_010 Hb_149985_010 Hb_005054_110--Hb_149985_010 Hb_019863_070 Hb_019863_070 Hb_005054_110--Hb_019863_070 Hb_001304_110 Hb_001304_110 Hb_005054_110--Hb_001304_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.9509 30.0455 19.2657 33.5435 14.5778 21.0875
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.9511 34.4065 26.38 31.3847 35.9157

CAGE analysis