Hb_000917_240

Information

Type -
Description -
Location Contig917: 248522-249511
Sequence    

Annotation

kegg
ID rcu:RCOM_0705030
description basic 7S globulin 2 precursor small subunit, putative
nr
ID XP_012082020.1
description PREDICTED: aspartic proteinase nepenthesin-1 [Jatropha curcas]
swissprot
ID Q766C3
description Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1
trembl
ID A0A067K2U7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18279 PE=4 SV=1
Gene Ontology
ID GO:0004190
description aspartic proteinase nepenthesin-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62287: 248618-249027 , PASA_asmbl_62288: 249028-249436
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000917_240 0.0 - - PREDICTED: aspartic proteinase nepenthesin-1 [Jatropha curcas]
2 Hb_000237_020 0.1346228587 - - PREDICTED: DNA replication licensing factor MCM4 [Jatropha curcas]
3 Hb_003430_080 0.1415222613 - - zinc finger protein, putative [Ricinus communis]
4 Hb_001053_210 0.1465103838 - - -
5 Hb_000581_030 0.1527534163 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000940_210 0.1578359893 - - cyclophilin [Hevea brasiliensis]
7 Hb_023226_030 0.1589212313 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-14-like [Jatropha curcas]
8 Hb_000740_090 0.161892469 - - conserved hypothetical protein [Ricinus communis]
9 Hb_186247_010 0.1621598946 - - PREDICTED: uridine 5'-monophosphate synthase-like [Pyrus x bretschneideri]
10 Hb_005694_180 0.1696771637 - - PREDICTED: cytochrome b5 [Jatropha curcas]
11 Hb_000307_220 0.1721908267 - - oxidoreductase family protein [Populus trichocarpa]
12 Hb_001195_420 0.1730988492 - - PREDICTED: uncharacterized protein LOC105633774 isoform X4 [Jatropha curcas]
13 Hb_011457_130 0.1781323933 - - PREDICTED: serine/threonine-protein kinase Nek2 [Jatropha curcas]
14 Hb_007192_050 0.178790486 - - PREDICTED: uncharacterized protein LOC105640295 [Jatropha curcas]
15 Hb_001619_100 0.1811025858 - - PREDICTED: uncharacterized protein LOC105630593 [Jatropha curcas]
16 Hb_000003_030 0.1827098985 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_000077_440 0.1848811999 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
18 Hb_002681_120 0.1861557477 - - PREDICTED: GDSL esterase/lipase At5g14450 [Jatropha curcas]
19 Hb_000309_030 0.1863942082 - - PREDICTED: formate dehydrogenase, mitochondrial [Jatropha curcas]
20 Hb_000134_120 0.1864587773 - - PREDICTED: uncharacterized protein LOC105628669 [Jatropha curcas]

Gene co-expression network

sample Hb_000917_240 Hb_000917_240 Hb_000237_020 Hb_000237_020 Hb_000917_240--Hb_000237_020 Hb_003430_080 Hb_003430_080 Hb_000917_240--Hb_003430_080 Hb_001053_210 Hb_001053_210 Hb_000917_240--Hb_001053_210 Hb_000581_030 Hb_000581_030 Hb_000917_240--Hb_000581_030 Hb_000940_210 Hb_000940_210 Hb_000917_240--Hb_000940_210 Hb_023226_030 Hb_023226_030 Hb_000917_240--Hb_023226_030 Hb_000307_220 Hb_000307_220 Hb_000237_020--Hb_000307_220 Hb_000237_020--Hb_000581_030 Hb_000237_020--Hb_003430_080 Hb_000237_020--Hb_000940_210 Hb_019654_060 Hb_019654_060 Hb_000237_020--Hb_019654_060 Hb_005694_180 Hb_005694_180 Hb_003430_080--Hb_005694_180 Hb_000003_030 Hb_000003_030 Hb_003430_080--Hb_000003_030 Hb_000740_090 Hb_000740_090 Hb_003430_080--Hb_000740_090 Hb_001195_420 Hb_001195_420 Hb_003430_080--Hb_001195_420 Hb_003430_080--Hb_023226_030 Hb_001009_150 Hb_001009_150 Hb_003430_080--Hb_001009_150 Hb_001053_210--Hb_000740_090 Hb_001053_210--Hb_000940_210 Hb_001053_210--Hb_003430_080 Hb_001053_210--Hb_023226_030 Hb_147245_010 Hb_147245_010 Hb_001053_210--Hb_147245_010 Hb_011457_130 Hb_011457_130 Hb_001053_210--Hb_011457_130 Hb_000581_030--Hb_000003_030 Hb_000581_030--Hb_019654_060 Hb_000581_030--Hb_000940_210 Hb_004032_210 Hb_004032_210 Hb_000581_030--Hb_004032_210 Hb_003740_020 Hb_003740_020 Hb_000581_030--Hb_003740_020 Hb_172706_020 Hb_172706_020 Hb_000940_210--Hb_172706_020 Hb_002374_270 Hb_002374_270 Hb_000940_210--Hb_002374_270 Hb_124677_030 Hb_124677_030 Hb_000940_210--Hb_124677_030 Hb_000940_210--Hb_003430_080 Hb_034507_060 Hb_034507_060 Hb_023226_030--Hb_034507_060 Hb_023226_030--Hb_172706_020 Hb_023226_030--Hb_005694_180 Hb_000309_030 Hb_000309_030 Hb_023226_030--Hb_000309_030 Hb_023226_030--Hb_001195_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.4618 2.49604 6.70898 10.3927 2.19014 0.40621
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.0263 0.887895 0.0742365 4.6105 1.40258

CAGE analysis