Hb_000917_320

Information

Type -
Description -
Location Contig917: 352125-360368
Sequence    

Annotation

kegg
ID tcc:TCM_011872
description Transmembrane Fragile-X-F-associated protein
nr
ID XP_012082022.1
description PREDICTED: uncharacterized protein LOC105641975 isoform X1 [Jatropha curcas]
swissprot
ID Q7M3S9
description RING finger protein B OS=Dictyostelium discoideum GN=rngB PE=2 SV=2
trembl
ID A0A067KAS2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18281 PE=4 SV=1
Gene Ontology
ID GO:0005634
description transmembrane fragile-x-f-associated protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62291: 354294-354530 , PASA_asmbl_62292: 355692-355986
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000917_320 0.0 - - PREDICTED: uncharacterized protein LOC105641975 isoform X1 [Jatropha curcas]
2 Hb_002304_060 0.0711249552 - - PREDICTED: glucosidase 2 subunit beta [Jatropha curcas]
3 Hb_000134_270 0.0753412859 - - arginine/serine rich splicing factor sf4/14, putative [Ricinus communis]
4 Hb_000864_030 0.0822485098 - - PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1 isoform X2 [Jatropha curcas]
5 Hb_000044_040 0.0862736669 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
6 Hb_000318_120 0.0862790404 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: DNA ligase 1 isoform X2 [Jatropha curcas]
7 Hb_004800_180 0.0867994036 - - PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Populus euphratica]
8 Hb_005332_020 0.087976325 transcription factor TF Family: SNF2 dead box ATP-dependent RNA helicase, putative [Ricinus communis]
9 Hb_008887_020 0.088818385 - - PREDICTED: uncharacterized protein LOC105636191 [Jatropha curcas]
10 Hb_000563_420 0.0910569002 - - PREDICTED: acyl-CoA dehydrogenase family member 10 [Jatropha curcas]
11 Hb_003943_020 0.0913984618 - - PREDICTED: peptidyl-prolyl cis-trans isomerase PASTICCINO1 isoform X1 [Jatropha curcas]
12 Hb_002374_260 0.0927070268 - - PREDICTED: probable methyltransferase-like protein 15 [Jatropha curcas]
13 Hb_162286_010 0.0930984097 - - PREDICTED: uncharacterized protein LOC105642699 [Jatropha curcas]
14 Hb_008103_080 0.0942804728 - - PREDICTED: lycopene epsilon cyclase, chloroplastic [Jatropha curcas]
15 Hb_002311_450 0.097337076 - - PREDICTED: acyl-CoA dehydrogenase family member 10 [Jatropha curcas]
16 Hb_000523_080 0.097972738 - - PREDICTED: LOW QUALITY PROTEIN: beta-catenin-like protein 1 [Jatropha curcas]
17 Hb_007044_110 0.0987570355 - - nucleic acid binding protein, putative [Ricinus communis]
18 Hb_000922_140 0.100697061 - - PREDICTED: peroxisomal membrane protein PEX14 [Jatropha curcas]
19 Hb_025557_050 0.1020923487 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74630 [Jatropha curcas]
20 Hb_171900_070 0.1029332212 - - -

Gene co-expression network

sample Hb_000917_320 Hb_000917_320 Hb_002304_060 Hb_002304_060 Hb_000917_320--Hb_002304_060 Hb_000134_270 Hb_000134_270 Hb_000917_320--Hb_000134_270 Hb_000864_030 Hb_000864_030 Hb_000917_320--Hb_000864_030 Hb_000044_040 Hb_000044_040 Hb_000917_320--Hb_000044_040 Hb_000318_120 Hb_000318_120 Hb_000917_320--Hb_000318_120 Hb_004800_180 Hb_004800_180 Hb_000917_320--Hb_004800_180 Hb_002374_260 Hb_002374_260 Hb_002304_060--Hb_002374_260 Hb_001377_110 Hb_001377_110 Hb_002304_060--Hb_001377_110 Hb_002304_060--Hb_004800_180 Hb_000224_150 Hb_000224_150 Hb_002304_060--Hb_000224_150 Hb_000085_140 Hb_000085_140 Hb_002304_060--Hb_000085_140 Hb_000134_270--Hb_000044_040 Hb_000134_270--Hb_000318_120 Hb_005289_040 Hb_005289_040 Hb_000134_270--Hb_005289_040 Hb_002889_010 Hb_002889_010 Hb_000134_270--Hb_002889_010 Hb_000665_120 Hb_000665_120 Hb_000134_270--Hb_000665_120 Hb_004020_040 Hb_004020_040 Hb_000134_270--Hb_004020_040 Hb_000679_020 Hb_000679_020 Hb_000864_030--Hb_000679_020 Hb_000174_170 Hb_000174_170 Hb_000864_030--Hb_000174_170 Hb_000864_030--Hb_004800_180 Hb_008059_010 Hb_008059_010 Hb_000864_030--Hb_008059_010 Hb_000563_420 Hb_000563_420 Hb_000864_030--Hb_000563_420 Hb_000115_280 Hb_000115_280 Hb_000864_030--Hb_000115_280 Hb_007441_130 Hb_007441_130 Hb_000044_040--Hb_007441_130 Hb_001268_280 Hb_001268_280 Hb_000044_040--Hb_001268_280 Hb_021443_040 Hb_021443_040 Hb_000044_040--Hb_021443_040 Hb_001500_050 Hb_001500_050 Hb_000044_040--Hb_001500_050 Hb_004097_070 Hb_004097_070 Hb_000044_040--Hb_004097_070 Hb_055235_020 Hb_055235_020 Hb_000318_120--Hb_055235_020 Hb_003943_020 Hb_003943_020 Hb_000318_120--Hb_003943_020 Hb_000523_080 Hb_000523_080 Hb_000318_120--Hb_000523_080 Hb_007044_110 Hb_007044_110 Hb_000318_120--Hb_007044_110 Hb_000318_120--Hb_000563_420 Hb_000103_570 Hb_000103_570 Hb_004800_180--Hb_000103_570 Hb_000181_100 Hb_000181_100 Hb_004800_180--Hb_000181_100 Hb_004800_180--Hb_000563_420 Hb_004800_180--Hb_000665_120 Hb_004800_180--Hb_000679_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.67165 3.65079 4.50158 1.83627 4.2313 4.00074
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.98073 2.10849 1.42068 3.93606 5.10934

CAGE analysis