Hb_000920_010

Information

Type -
Description -
Location Contig920: 6456-7286
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa013940mg
description hypothetical protein
nr
ID XP_007220495.1
description hypothetical protein PRUPE_ppa013940mg [Prunus persica]
swissprot
ID -
description -
trembl
ID M5X6X5
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013940mg PE=4 SV=1
Gene Ontology
ID GO:0016020
description alanine--trna ligase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62379: 6460-24379 , PASA_asmbl_62380: 6626-22858
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000920_010 0.0 - - hypothetical protein PRUPE_ppa013940mg [Prunus persica]
2 Hb_004586_430 0.1036831577 - - PREDICTED: 29 kDa ribonucleoprotein, chloroplastic [Jatropha curcas]
3 Hb_160256_010 0.1087150071 - - -
4 Hb_000108_050 0.1216134166 - - PREDICTED: mitochondrial dicarboxylate/tricarboxylate transporter DTC [Jatropha curcas]
5 Hb_156850_100 0.1231090295 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
6 Hb_160271_010 0.1246864326 - - PREDICTED: FAD synthase-like isoform X2 [Jatropha curcas]
7 Hb_022693_130 0.1292674201 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
8 Hb_000359_290 0.1321882883 - - Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative [Ricinus communis]
9 Hb_174865_040 0.1322265245 - - PREDICTED: crt homolog 1 isoform X2 [Jatropha curcas]
10 Hb_000300_200 0.1339074086 - - PREDICTED: xylosyltransferase 1 [Jatropha curcas]
11 Hb_003935_060 0.1340592803 - - PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 [Jatropha curcas]
12 Hb_008566_040 0.1389881851 - - PREDICTED: uncharacterized protein LOC105647590 isoform X1 [Jatropha curcas]
13 Hb_000016_310 0.1408242404 - - protein binding protein, putative [Ricinus communis]
14 Hb_006816_190 0.1411725737 - - calreticulin family protein [Populus trichocarpa]
15 Hb_000676_060 0.1423406954 - - Sec14 cytosolic factor, putative [Ricinus communis]
16 Hb_000029_110 0.1445038816 - - conserved hypothetical protein [Ricinus communis]
17 Hb_163950_070 0.1448625217 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
18 Hb_005062_060 0.1450961281 - - PREDICTED: uncharacterized protein At4g06598-like [Jatropha curcas]
19 Hb_001022_030 0.1465273915 - - PREDICTED: sorting nexin 1 [Jatropha curcas]
20 Hb_011926_040 0.1476186908 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000920_010 Hb_000920_010 Hb_004586_430 Hb_004586_430 Hb_000920_010--Hb_004586_430 Hb_160256_010 Hb_160256_010 Hb_000920_010--Hb_160256_010 Hb_000108_050 Hb_000108_050 Hb_000920_010--Hb_000108_050 Hb_156850_100 Hb_156850_100 Hb_000920_010--Hb_156850_100 Hb_160271_010 Hb_160271_010 Hb_000920_010--Hb_160271_010 Hb_022693_130 Hb_022693_130 Hb_000920_010--Hb_022693_130 Hb_001195_270 Hb_001195_270 Hb_004586_430--Hb_001195_270 Hb_003752_070 Hb_003752_070 Hb_004586_430--Hb_003752_070 Hb_004586_430--Hb_156850_100 Hb_011310_140 Hb_011310_140 Hb_004586_430--Hb_011310_140 Hb_003883_010 Hb_003883_010 Hb_004586_430--Hb_003883_010 Hb_001195_640 Hb_001195_640 Hb_160256_010--Hb_001195_640 Hb_000181_060 Hb_000181_060 Hb_160256_010--Hb_000181_060 Hb_002284_210 Hb_002284_210 Hb_160256_010--Hb_002284_210 Hb_030545_010 Hb_030545_010 Hb_160256_010--Hb_030545_010 Hb_000140_440 Hb_000140_440 Hb_160256_010--Hb_000140_440 Hb_000445_140 Hb_000445_140 Hb_000108_050--Hb_000445_140 Hb_002150_140 Hb_002150_140 Hb_000108_050--Hb_002150_140 Hb_000108_050--Hb_156850_100 Hb_001828_040 Hb_001828_040 Hb_000108_050--Hb_001828_040 Hb_001014_100 Hb_001014_100 Hb_000108_050--Hb_001014_100 Hb_000244_180 Hb_000244_180 Hb_000108_050--Hb_000244_180 Hb_156850_100--Hb_160271_010 Hb_048093_010 Hb_048093_010 Hb_156850_100--Hb_048093_010 Hb_174865_040 Hb_174865_040 Hb_156850_100--Hb_174865_040 Hb_002631_240 Hb_002631_240 Hb_156850_100--Hb_002631_240 Hb_012573_050 Hb_012573_050 Hb_156850_100--Hb_012573_050 Hb_001882_010 Hb_001882_010 Hb_156850_100--Hb_001882_010 Hb_160271_010--Hb_022693_130 Hb_000291_180 Hb_000291_180 Hb_160271_010--Hb_000291_180 Hb_000320_190 Hb_000320_190 Hb_160271_010--Hb_000320_190 Hb_002107_050 Hb_002107_050 Hb_160271_010--Hb_002107_050 Hb_000108_020 Hb_000108_020 Hb_160271_010--Hb_000108_020 Hb_005062_060 Hb_005062_060 Hb_022693_130--Hb_005062_060 Hb_068079_010 Hb_068079_010 Hb_022693_130--Hb_068079_010 Hb_000645_180 Hb_000645_180 Hb_022693_130--Hb_000645_180 Hb_022693_130--Hb_000108_020 Hb_000107_250 Hb_000107_250 Hb_022693_130--Hb_000107_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.59619 1.87963 14.0576 11.2368 3.50018 4.33021
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.39118 2.96993 2.94197 1.18481 10.5093

CAGE analysis