Hb_000920_040

Information

Type -
Description -
Location Contig920: 26323-27477
Sequence    

Annotation

kegg
ID tcc:TCM_012014
description F-box and associated interaction domains-containing-like protein
nr
ID XP_012087183.1
description PREDICTED: F-box protein At1g30790-like [Jatropha curcas]
swissprot
ID Q5BPS3
description F-box protein DOR OS=Arabidopsis thaliana GN=DOR PE=1 SV=2
trembl
ID A0A067JMR0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20412 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62381: 26680-27302
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000920_040 0.0 - - PREDICTED: F-box protein At1g30790-like [Jatropha curcas]
2 Hb_000798_060 0.0826250515 transcription factor TF Family: PHD -
3 Hb_002270_010 0.0957713289 - - Chaperone protein dnaJ, putative [Ricinus communis]
4 Hb_000300_280 0.1061754943 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
5 Hb_000370_030 0.1110240181 - - PREDICTED: uncharacterized protein LOC105639493 [Jatropha curcas]
6 Hb_002248_140 0.1117343225 - - acetylglucosaminyltransferase, putative [Ricinus communis]
7 Hb_015401_020 0.1130723236 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
8 Hb_005147_110 0.1140177709 - - eukaryotic translation elongation factor 1B gamma-subunit [Hevea brasiliensis]
9 Hb_000172_550 0.1147615746 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA1-like [Jatropha curcas]
10 Hb_000373_270 0.1158515716 transcription factor TF Family: bZIP PREDICTED: G-box-binding factor 4 isoform X1 [Jatropha curcas]
11 Hb_008725_250 0.1162789552 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]
12 Hb_004310_060 0.1171434102 - - PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Jatropha curcas]
13 Hb_000392_070 0.11716795 - - catalytic, putative [Ricinus communis]
14 Hb_006452_030 0.1192320961 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
15 Hb_030312_040 0.1194088467 - - hypothetical protein JCGZ_04876 [Jatropha curcas]
16 Hb_004055_010 0.1200079153 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
17 Hb_000184_130 0.1215808302 - - PREDICTED: uncharacterized protein LOC105641544 isoform X1 [Jatropha curcas]
18 Hb_005324_010 0.1228589046 - - Chaperone protein dnaJ, putative [Ricinus communis]
19 Hb_006829_040 0.1228923137 - - hypothetical protein POPTR_0001s44750g [Populus trichocarpa]
20 Hb_002111_030 0.1229458666 - - PREDICTED: NEDD8 ultimate buster 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000920_040 Hb_000920_040 Hb_000798_060 Hb_000798_060 Hb_000920_040--Hb_000798_060 Hb_002270_010 Hb_002270_010 Hb_000920_040--Hb_002270_010 Hb_000300_280 Hb_000300_280 Hb_000920_040--Hb_000300_280 Hb_000370_030 Hb_000370_030 Hb_000920_040--Hb_000370_030 Hb_002248_140 Hb_002248_140 Hb_000920_040--Hb_002248_140 Hb_015401_020 Hb_015401_020 Hb_000920_040--Hb_015401_020 Hb_008725_250 Hb_008725_250 Hb_000798_060--Hb_008725_250 Hb_015941_030 Hb_015941_030 Hb_000798_060--Hb_015941_030 Hb_004055_010 Hb_004055_010 Hb_000798_060--Hb_004055_010 Hb_086063_010 Hb_086063_010 Hb_000798_060--Hb_086063_010 Hb_000032_620 Hb_000032_620 Hb_000798_060--Hb_000032_620 Hb_005144_040 Hb_005144_040 Hb_002270_010--Hb_005144_040 Hb_000076_290 Hb_000076_290 Hb_002270_010--Hb_000076_290 Hb_000172_550 Hb_000172_550 Hb_002270_010--Hb_000172_550 Hb_000735_120 Hb_000735_120 Hb_002270_010--Hb_000735_120 Hb_001439_180 Hb_001439_180 Hb_002270_010--Hb_001439_180 Hb_002270_010--Hb_015401_020 Hb_004310_060 Hb_004310_060 Hb_000300_280--Hb_004310_060 Hb_000879_140 Hb_000879_140 Hb_000300_280--Hb_000879_140 Hb_000300_280--Hb_000370_030 Hb_003728_030 Hb_003728_030 Hb_000300_280--Hb_003728_030 Hb_000184_130 Hb_000184_130 Hb_000300_280--Hb_000184_130 Hb_000373_270 Hb_000373_270 Hb_000300_280--Hb_000373_270 Hb_000370_030--Hb_000184_130 Hb_000457_060 Hb_000457_060 Hb_000370_030--Hb_000457_060 Hb_000370_030--Hb_004310_060 Hb_000568_040 Hb_000568_040 Hb_000370_030--Hb_000568_040 Hb_000316_030 Hb_000316_030 Hb_000370_030--Hb_000316_030 Hb_027028_020 Hb_027028_020 Hb_002248_140--Hb_027028_020 Hb_000866_030 Hb_000866_030 Hb_002248_140--Hb_000866_030 Hb_004310_050 Hb_004310_050 Hb_002248_140--Hb_004310_050 Hb_000915_050 Hb_000915_050 Hb_002248_140--Hb_000915_050 Hb_002196_020 Hb_002196_020 Hb_002248_140--Hb_002196_020 Hb_015401_020--Hb_000076_290 Hb_000174_200 Hb_000174_200 Hb_015401_020--Hb_000174_200 Hb_001274_020 Hb_001274_020 Hb_015401_020--Hb_001274_020 Hb_015401_020--Hb_001439_180 Hb_005314_010 Hb_005314_010 Hb_015401_020--Hb_005314_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.2236 23.6507 2.04408 10.5466 21.9317 36.3022
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.822 11.5604 16.3759 9.42944 3.31179

CAGE analysis