Hb_000920_070

Information

Type -
Description -
Location Contig920: 50016-50656
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000920_070 0.0 - - -
2 Hb_155556_010 0.129197988 - - putative methylenetetrahydrofolate reductase [Morus notabilis]
3 Hb_001780_010 0.1300895459 - - hypothetical protein CICLE_v10006597mg [Citrus clementina]
4 Hb_010810_070 0.1351592473 - - serine/threonine kinase, putative [Ricinus communis]
5 Hb_001524_020 0.1841169667 - - Pollen-specific protein C13 precursor, putative [Ricinus communis]
6 Hb_095835_010 0.202840409 - - hypothetical protein JCGZ_23410 [Jatropha curcas]
7 Hb_057638_010 0.2091197983 - - PREDICTED: uncharacterized protein LOC105637008 [Jatropha curcas]
8 Hb_188487_010 0.2091942102 - - hypothetical protein JCGZ_24382 [Jatropha curcas]
9 Hb_002774_010 0.2158245006 - - -
10 Hb_003197_060 0.2269871909 - - hypothetical protein POPTR_0015s11900g [Populus trichocarpa]
11 Hb_128531_010 0.2291177841 - - phosphoprotein phosphatase, putative [Ricinus communis]
12 Hb_169514_010 0.2467822227 - - PREDICTED: uncharacterized protein LOC103331076 [Prunus mume]
13 Hb_043792_020 0.2496014804 - - Retrotransposon gag protein [Medicago truncatula]
14 Hb_003376_280 0.2503907806 - - ATP binding protein, putative [Ricinus communis]
15 Hb_001519_210 0.2536086756 - - hypothetical protein B456_003G032500 [Gossypium raimondii]
16 Hb_005439_010 0.2542706408 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
17 Hb_093039_010 0.2572099042 - - JHL22C18.10 [Jatropha curcas]
18 Hb_000190_130 0.2572818983 - - cysteine protease inhibitor [Populus tremula]
19 Hb_002570_050 0.2575824597 - - PREDICTED: uncharacterized protein LOC104897677 [Beta vulgaris subsp. vulgaris]
20 Hb_002092_040 0.2575948282 - - PREDICTED: protein YLS3 [Jatropha curcas]

Gene co-expression network

sample Hb_000920_070 Hb_000920_070 Hb_155556_010 Hb_155556_010 Hb_000920_070--Hb_155556_010 Hb_001780_010 Hb_001780_010 Hb_000920_070--Hb_001780_010 Hb_010810_070 Hb_010810_070 Hb_000920_070--Hb_010810_070 Hb_001524_020 Hb_001524_020 Hb_000920_070--Hb_001524_020 Hb_095835_010 Hb_095835_010 Hb_000920_070--Hb_095835_010 Hb_057638_010 Hb_057638_010 Hb_000920_070--Hb_057638_010 Hb_155556_010--Hb_001780_010 Hb_012071_010 Hb_012071_010 Hb_155556_010--Hb_012071_010 Hb_012295_020 Hb_012295_020 Hb_155556_010--Hb_012295_020 Hb_155556_010--Hb_001524_020 Hb_001519_210 Hb_001519_210 Hb_155556_010--Hb_001519_210 Hb_001780_010--Hb_001524_020 Hb_002774_010 Hb_002774_010 Hb_001780_010--Hb_002774_010 Hb_188487_010 Hb_188487_010 Hb_001780_010--Hb_188487_010 Hb_002092_040 Hb_002092_040 Hb_001780_010--Hb_002092_040 Hb_003376_280 Hb_003376_280 Hb_010810_070--Hb_003376_280 Hb_003780_010 Hb_003780_010 Hb_010810_070--Hb_003780_010 Hb_000190_130 Hb_000190_130 Hb_010810_070--Hb_000190_130 Hb_093039_010 Hb_093039_010 Hb_010810_070--Hb_093039_010 Hb_000574_490 Hb_000574_490 Hb_010810_070--Hb_000574_490 Hb_001524_020--Hb_002774_010 Hb_001524_020--Hb_188487_010 Hb_001524_020--Hb_010810_070 Hb_128531_010 Hb_128531_010 Hb_095835_010--Hb_128531_010 Hb_004052_060 Hb_004052_060 Hb_095835_010--Hb_004052_060 Hb_095835_010--Hb_010810_070 Hb_095835_010--Hb_155556_010 Hb_005439_010 Hb_005439_010 Hb_095835_010--Hb_005439_010 Hb_057638_010--Hb_128531_010 Hb_057638_010--Hb_095835_010 Hb_057638_010--Hb_010810_070 Hb_009848_060 Hb_009848_060 Hb_057638_010--Hb_009848_060 Hb_014324_010 Hb_014324_010 Hb_057638_010--Hb_014324_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0644071 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.382498 1.61946 1.47605

CAGE analysis