Hb_000920_110

Information

Type -
Description -
Location Contig920: 61015-65291
Sequence    

Annotation

kegg
ID rcu:RCOM_1453180
description U3 small nucleolar ribonucleoprotein protein imp4, putative
nr
ID XP_012068621.1
description PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
swissprot
ID Q5PQR5
description U3 small nucleolar ribonucleoprotein protein IMP4 OS=Rattus norvegicus GN=Imp4 PE=2 SV=1
trembl
ID A0A067KWH1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24506 PE=4 SV=1
Gene Ontology
ID GO:0005730
description u3 small nucleolar ribonucleoprotein protein imp4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62387: 61030-65171
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000920_110 0.0 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
2 Hb_003226_100 0.0511282438 - - PREDICTED: 60S ribosomal protein L18-2 [Jatropha curcas]
3 Hb_002056_050 0.0524385411 - - PREDICTED: uncharacterized protein LOC105130744 [Populus euphratica]
4 Hb_001484_070 0.0528510384 - - conserved hypothetical protein [Ricinus communis]
5 Hb_010175_040 0.0564489476 - - PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Jatropha curcas]
6 Hb_000479_090 0.0588742499 - - PREDICTED: zinc finger RNA-binding protein [Jatropha curcas]
7 Hb_001616_040 0.059390237 - - PREDICTED: uncharacterized protein LOC105644362 [Jatropha curcas]
8 Hb_004143_150 0.0597926781 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X6 [Jatropha curcas]
9 Hb_000261_140 0.0618905874 - - -
10 Hb_000417_360 0.0622959653 - - PREDICTED: hexaprenyldihydroxybenzoate methyltransferase, mitochondrial [Jatropha curcas]
11 Hb_001047_230 0.0657846011 - - WD-repeat protein, putative [Ricinus communis]
12 Hb_000172_320 0.0679289713 - - PREDICTED: ribosome biogenesis protein TSR3 homolog [Jatropha curcas]
13 Hb_000059_370 0.0692636079 - - PREDICTED: U6 snRNA phosphodiesterase [Jatropha curcas]
14 Hb_002995_020 0.0701232847 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
15 Hb_015279_010 0.0703779412 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
16 Hb_000384_100 0.0711025254 - - hydrolase, putative [Ricinus communis]
17 Hb_000527_060 0.071482793 - - Protein C20orf11, putative [Ricinus communis]
18 Hb_001123_130 0.0718197206 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
19 Hb_001504_110 0.0722885076 - - PREDICTED: uncharacterized protein LOC105630336 [Jatropha curcas]
20 Hb_001979_040 0.07379071 - - PREDICTED: 60S ribosomal protein L21-1-like [Gossypium raimondii]

Gene co-expression network

sample Hb_000920_110 Hb_000920_110 Hb_003226_100 Hb_003226_100 Hb_000920_110--Hb_003226_100 Hb_002056_050 Hb_002056_050 Hb_000920_110--Hb_002056_050 Hb_001484_070 Hb_001484_070 Hb_000920_110--Hb_001484_070 Hb_010175_040 Hb_010175_040 Hb_000920_110--Hb_010175_040 Hb_000479_090 Hb_000479_090 Hb_000920_110--Hb_000479_090 Hb_001616_040 Hb_001616_040 Hb_000920_110--Hb_001616_040 Hb_004157_030 Hb_004157_030 Hb_003226_100--Hb_004157_030 Hb_003018_020 Hb_003018_020 Hb_003226_100--Hb_003018_020 Hb_003226_100--Hb_002056_050 Hb_003226_100--Hb_001616_040 Hb_143496_010 Hb_143496_010 Hb_003226_100--Hb_143496_010 Hb_010068_020 Hb_010068_020 Hb_002056_050--Hb_010068_020 Hb_003540_240 Hb_003540_240 Hb_002056_050--Hb_003540_240 Hb_000172_320 Hb_000172_320 Hb_002056_050--Hb_000172_320 Hb_002056_050--Hb_001484_070 Hb_000453_120 Hb_000453_120 Hb_001484_070--Hb_000453_120 Hb_000261_140 Hb_000261_140 Hb_001484_070--Hb_000261_140 Hb_001979_040 Hb_001979_040 Hb_001484_070--Hb_001979_040 Hb_001085_120 Hb_001085_120 Hb_001484_070--Hb_001085_120 Hb_010175_040--Hb_000261_140 Hb_010175_040--Hb_143496_010 Hb_000417_360 Hb_000417_360 Hb_010175_040--Hb_000417_360 Hb_001141_140 Hb_001141_140 Hb_010175_040--Hb_001141_140 Hb_010175_040--Hb_001616_040 Hb_000384_100 Hb_000384_100 Hb_000479_090--Hb_000384_100 Hb_000059_370 Hb_000059_370 Hb_000479_090--Hb_000059_370 Hb_004127_020 Hb_004127_020 Hb_000479_090--Hb_004127_020 Hb_000676_180 Hb_000676_180 Hb_000479_090--Hb_000676_180 Hb_002686_020 Hb_002686_020 Hb_000479_090--Hb_002686_020 Hb_006541_010 Hb_006541_010 Hb_001616_040--Hb_006541_010 Hb_001016_030 Hb_001016_030 Hb_001616_040--Hb_001016_030 Hb_000030_290 Hb_000030_290 Hb_001616_040--Hb_000030_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.669 9.16492 12.9315 12.9978 13.3551 14.446
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.296 44.0031 20.887 12.8205 10.3304

CAGE analysis