Hb_000920_180

Information

Type -
Description -
Location Contig920: 107941-111079
Sequence    

Annotation

kegg
ID vvi:100256604
description F-box protein SKIP5
nr
ID XP_012068632.1
description PREDICTED: F-box protein SKIP5 [Jatropha curcas]
swissprot
ID Q94FT2
description F-box protein SKIP5 OS=Arabidopsis thaliana GN=SKIP5 PE=1 SV=1
trembl
ID A0A067L7M8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24514 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62402: 107926-111008 , PASA_asmbl_62405: 108703-108918 , PASA_asmbl_62407: 110130-110369
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000920_180 0.0 - - PREDICTED: F-box protein SKIP5 [Jatropha curcas]
2 Hb_000056_200 0.0563664456 - - 40S ribosomal S9-2 -like protein [Gossypium arboreum]
3 Hb_003929_250 0.0565900172 - - PREDICTED: proteasome assembly chaperone 4 [Jatropha curcas]
4 Hb_000656_400 0.0594487117 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
5 Hb_000120_790 0.0671652397 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
6 Hb_118707_030 0.0672352762 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Beta vulgaris subsp. vulgaris]
7 Hb_005993_040 0.0679333581 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4 [Jatropha curcas]
8 Hb_002044_080 0.0691649453 - - PREDICTED: secretion-regulating guanine nucleotide exchange factor isoform X2 [Jatropha curcas]
9 Hb_000465_460 0.0699120861 - - PREDICTED: U3 small nucleolar RNA-associated protein 25 [Jatropha curcas]
10 Hb_001226_160 0.0715712421 - - PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform X1 [Jatropha curcas]
11 Hb_000243_030 0.0726157861 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
12 Hb_001821_010 0.0729937391 - - PREDICTED: uncharacterized protein C9orf78 [Jatropha curcas]
13 Hb_002226_070 0.0739885157 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
14 Hb_002609_020 0.0744006948 - - PREDICTED: phosphatidylinositol N-acetylglucosaminyltransferase subunit P-like [Jatropha curcas]
15 Hb_010921_010 0.0748888061 - - Small nuclear ribonucleoprotein family protein [Theobroma cacao]
16 Hb_000093_160 0.0752980905 - - PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1 [Jatropha curcas]
17 Hb_003010_030 0.0778335747 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
18 Hb_001489_060 0.0779644267 - - PREDICTED: uncharacterized protein LOC105649778 isoform X2 [Jatropha curcas]
19 Hb_096563_010 0.0786553896 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Prunus mume]
20 Hb_002660_080 0.0800104971 - - 60S ribosomal protein L12A [Hevea brasiliensis]

Gene co-expression network

sample Hb_000920_180 Hb_000920_180 Hb_000056_200 Hb_000056_200 Hb_000920_180--Hb_000056_200 Hb_003929_250 Hb_003929_250 Hb_000920_180--Hb_003929_250 Hb_000656_400 Hb_000656_400 Hb_000920_180--Hb_000656_400 Hb_000120_790 Hb_000120_790 Hb_000920_180--Hb_000120_790 Hb_118707_030 Hb_118707_030 Hb_000920_180--Hb_118707_030 Hb_005993_040 Hb_005993_040 Hb_000920_180--Hb_005993_040 Hb_001821_010 Hb_001821_010 Hb_000056_200--Hb_001821_010 Hb_003050_080 Hb_003050_080 Hb_000056_200--Hb_003050_080 Hb_000243_030 Hb_000243_030 Hb_000056_200--Hb_000243_030 Hb_063716_050 Hb_063716_050 Hb_000056_200--Hb_063716_050 Hb_002044_080 Hb_002044_080 Hb_000056_200--Hb_002044_080 Hb_000340_300 Hb_000340_300 Hb_003929_250--Hb_000340_300 Hb_009557_070 Hb_009557_070 Hb_003929_250--Hb_009557_070 Hb_003929_250--Hb_000056_200 Hb_096563_010 Hb_096563_010 Hb_003929_250--Hb_096563_010 Hb_000465_460 Hb_000465_460 Hb_003929_250--Hb_000465_460 Hb_003126_080 Hb_003126_080 Hb_000656_400--Hb_003126_080 Hb_001226_160 Hb_001226_160 Hb_000656_400--Hb_001226_160 Hb_000656_400--Hb_118707_030 Hb_001259_090 Hb_001259_090 Hb_000656_400--Hb_001259_090 Hb_001766_110 Hb_001766_110 Hb_000656_400--Hb_001766_110 Hb_000342_130 Hb_000342_130 Hb_000120_790--Hb_000342_130 Hb_007691_030 Hb_007691_030 Hb_000120_790--Hb_007691_030 Hb_003010_030 Hb_003010_030 Hb_000120_790--Hb_003010_030 Hb_000093_160 Hb_000093_160 Hb_000120_790--Hb_000093_160 Hb_001776_140 Hb_001776_140 Hb_000120_790--Hb_001776_140 Hb_001006_140 Hb_001006_140 Hb_000120_790--Hb_001006_140 Hb_002214_040 Hb_002214_040 Hb_118707_030--Hb_002214_040 Hb_002205_070 Hb_002205_070 Hb_118707_030--Hb_002205_070 Hb_011689_080 Hb_011689_080 Hb_118707_030--Hb_011689_080 Hb_000815_040 Hb_000815_040 Hb_118707_030--Hb_000815_040 Hb_000107_620 Hb_000107_620 Hb_118707_030--Hb_000107_620 Hb_002043_190 Hb_002043_190 Hb_005993_040--Hb_002043_190 Hb_002928_130 Hb_002928_130 Hb_005993_040--Hb_002928_130 Hb_011571_020 Hb_011571_020 Hb_005993_040--Hb_011571_020 Hb_011360_140 Hb_011360_140 Hb_005993_040--Hb_011360_140 Hb_000392_440 Hb_000392_440 Hb_005993_040--Hb_000392_440 Hb_005993_040--Hb_003126_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.904 9.53053 10.6394 7.04646 16.7053 21.5974
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.6824 27.8237 14.0996 10.4032 9.38266

CAGE analysis