Hb_000920_210

Information

Type -
Description -
Location Contig920: 121648-125798
Sequence    

Annotation

kegg
ID pop:POPTR_0001s06360g
description POPTRDRAFT_708505; Uridine 5'-monophosphate synthase family protein
nr
ID XP_012068641.1
description PREDICTED: uridine 5'-monophosphate synthase [Jatropha curcas]
swissprot
ID Q42586
description Uridine 5'-monophosphate synthase OS=Arabidopsis thaliana GN=PYRE-F PE=2 SV=2
trembl
ID A0A067KZU4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24517 PE=3 SV=1
Gene Ontology
ID GO:0005829
description uridine 5 -monophosphate synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62412: 121598-122883 , PASA_asmbl_62414: 126607-127298
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000920_210 0.0 - - PREDICTED: uridine 5'-monophosphate synthase [Jatropha curcas]
2 Hb_001623_480 0.0602912503 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 13 [Jatropha curcas]
3 Hb_003952_150 0.0603972448 - - PREDICTED: cactin [Jatropha curcas]
4 Hb_000033_030 0.0678416361 - - PREDICTED: ankyrin repeat protein SKIP35 [Jatropha curcas]
5 Hb_000190_120 0.0735171544 - - PREDICTED: uncharacterized protein LOC105649936 [Jatropha curcas]
6 Hb_010381_060 0.0774208845 - - DEAD-box ATP-dependent RNA helicase 20 -like protein [Gossypium arboreum]
7 Hb_025477_040 0.0794574202 - - PREDICTED: post-GPI attachment to proteins factor 3 [Jatropha curcas]
8 Hb_000300_440 0.0796952725 - - MIF4G domain and MA3 domain-containing protein isoform 1 [Theobroma cacao]
9 Hb_003362_070 0.0822192304 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
10 Hb_002329_040 0.0822383518 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
11 Hb_104061_020 0.0826087513 - - PREDICTED: UV-stimulated scaffold protein A homolog [Jatropha curcas]
12 Hb_000505_020 0.082643869 - - PREDICTED: protein S-acyltransferase 24 [Jatropha curcas]
13 Hb_016898_010 0.0827124305 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
14 Hb_000343_030 0.0835796212 - - PREDICTED: uncharacterized protein LOC105634976 [Jatropha curcas]
15 Hb_007632_240 0.0848007799 - - transporter, putative [Ricinus communis]
16 Hb_000109_100 0.0851737083 - - PREDICTED: poly [ADP-ribose] polymerase 1 [Jatropha curcas]
17 Hb_009175_020 0.0851839626 - - PREDICTED: uncharacterized protein LOC101303140 [Fragaria vesca subsp. vesca]
18 Hb_000347_070 0.0853404427 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000743_040 0.0855014542 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
20 Hb_000193_190 0.0860206005 - - PREDICTED: dnaJ homolog subfamily C member 16 [Jatropha curcas]

Gene co-expression network

sample Hb_000920_210 Hb_000920_210 Hb_001623_480 Hb_001623_480 Hb_000920_210--Hb_001623_480 Hb_003952_150 Hb_003952_150 Hb_000920_210--Hb_003952_150 Hb_000033_030 Hb_000033_030 Hb_000920_210--Hb_000033_030 Hb_000190_120 Hb_000190_120 Hb_000920_210--Hb_000190_120 Hb_010381_060 Hb_010381_060 Hb_000920_210--Hb_010381_060 Hb_025477_040 Hb_025477_040 Hb_000920_210--Hb_025477_040 Hb_008024_030 Hb_008024_030 Hb_001623_480--Hb_008024_030 Hb_004920_090 Hb_004920_090 Hb_001623_480--Hb_004920_090 Hb_000740_100 Hb_000740_100 Hb_001623_480--Hb_000740_100 Hb_000109_100 Hb_000109_100 Hb_001623_480--Hb_000109_100 Hb_104061_020 Hb_104061_020 Hb_001623_480--Hb_104061_020 Hb_016898_010 Hb_016898_010 Hb_003952_150--Hb_016898_010 Hb_000084_120 Hb_000084_120 Hb_003952_150--Hb_000084_120 Hb_003362_070 Hb_003362_070 Hb_003952_150--Hb_003362_070 Hb_003952_150--Hb_010381_060 Hb_000320_200 Hb_000320_200 Hb_003952_150--Hb_000320_200 Hb_000033_030--Hb_003952_150 Hb_000072_350 Hb_000072_350 Hb_000033_030--Hb_000072_350 Hb_002974_060 Hb_002974_060 Hb_000033_030--Hb_002974_060 Hb_000743_040 Hb_000743_040 Hb_000033_030--Hb_000743_040 Hb_003052_150 Hb_003052_150 Hb_000033_030--Hb_003052_150 Hb_007576_110 Hb_007576_110 Hb_000190_120--Hb_007576_110 Hb_002823_030 Hb_002823_030 Hb_000190_120--Hb_002823_030 Hb_003371_110 Hb_003371_110 Hb_000190_120--Hb_003371_110 Hb_000347_070 Hb_000347_070 Hb_000190_120--Hb_000347_070 Hb_009175_020 Hb_009175_020 Hb_000190_120--Hb_009175_020 Hb_003680_150 Hb_003680_150 Hb_000190_120--Hb_003680_150 Hb_003464_020 Hb_003464_020 Hb_010381_060--Hb_003464_020 Hb_000714_050 Hb_000714_050 Hb_010381_060--Hb_000714_050 Hb_000029_130 Hb_000029_130 Hb_010381_060--Hb_000029_130 Hb_000023_190 Hb_000023_190 Hb_010381_060--Hb_000023_190 Hb_009627_010 Hb_009627_010 Hb_010381_060--Hb_009627_010 Hb_001599_030 Hb_001599_030 Hb_010381_060--Hb_001599_030 Hb_032202_200 Hb_032202_200 Hb_025477_040--Hb_032202_200 Hb_123903_010 Hb_123903_010 Hb_025477_040--Hb_123903_010 Hb_002815_030 Hb_002815_030 Hb_025477_040--Hb_002815_030 Hb_012053_080 Hb_012053_080 Hb_025477_040--Hb_012053_080 Hb_002329_040 Hb_002329_040 Hb_025477_040--Hb_002329_040 Hb_021297_050 Hb_021297_050 Hb_025477_040--Hb_021297_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.8066 11.2179 7.44329 8.37529 22.7702 18.672
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.0076 6.68607 9.29913 16.5778 11.0505

CAGE analysis