Hb_000920_280

Information

Type -
Description -
Location Contig920: 176048-176881
Sequence    

Annotation

kegg
ID rcu:RCOM_0809580
description Protein SENSITIVITY TO RED LIGHT REDUCED, putative
nr
ID XP_002520923.1
description Protein SENSITIVITY TO RED LIGHT REDUCED, putative [Ricinus communis]
swissprot
ID Q8GWZ6
description Protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Arabidopsis thaliana GN=SRR1 PE=2 SV=2
trembl
ID B9S4K4
description Protein SENSITIVITY TO RED LIGHT REDUCED, putative OS=Ricinus communis GN=RCOM_0809580 PE=4 SV=1
Gene Ontology
ID GO:0007623
description protein sensitivity to red light reduced 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62426: 175957-178701 , PASA_asmbl_62427: 177529-177718 , PASA_asmbl_62428: 177840-178121
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000920_280 0.0 - - Protein SENSITIVITY TO RED LIGHT REDUCED, putative [Ricinus communis]
2 Hb_006623_020 0.0738067997 - - PREDICTED: protein LURP-one-related 7 isoform X1 [Jatropha curcas]
3 Hb_003091_010 0.0778361811 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
4 Hb_000211_110 0.0813362797 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 35 kDa protein isoform X1 [Jatropha curcas]
5 Hb_000923_040 0.0855168202 - - PREDICTED: 15 kDa selenoprotein [Jatropha curcas]
6 Hb_003142_070 0.0859141838 - - hypothetical protein F383_14657 [Gossypium arboreum]
7 Hb_010968_010 0.0902203274 - - Golgi snare 12 isoform 1 [Theobroma cacao]
8 Hb_000617_220 0.0912263475 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
9 Hb_004450_060 0.09280658 - - PREDICTED: uncharacterized protein LOC105638784 isoform X2 [Jatropha curcas]
10 Hb_001754_240 0.0934057799 - - PREDICTED: mitochondrial thiamine pyrophosphate carrier isoform X1 [Jatropha curcas]
11 Hb_005656_210 0.0935708517 - - PREDICTED: uncharacterized protein LOC105637440 [Jatropha curcas]
12 Hb_000104_080 0.0938585286 - - PREDICTED: WD repeat domain-containing protein 83 [Jatropha curcas]
13 Hb_001357_380 0.0939904831 - - PREDICTED: probable tetraacyldisaccharide 4'-kinase, mitochondrial isoform X1 [Jatropha curcas]
14 Hb_001894_030 0.0944654286 - - Nucleic acid-binding, OB-fold-like protein [Theobroma cacao]
15 Hb_001040_040 0.1000029536 - - Uncharacterized protein TCM_029905 [Theobroma cacao]
16 Hb_000359_330 0.1006565543 - - conserved hypothetical protein [Ricinus communis]
17 Hb_021422_010 0.1013840992 - - PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial [Jatropha curcas]
18 Hb_000640_220 0.1022218558 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-4 [Jatropha curcas]
19 Hb_000808_250 0.1026266343 - - PREDICTED: uncharacterized protein LOC105647419 [Jatropha curcas]
20 Hb_008887_050 0.1042628472 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]

Gene co-expression network

sample Hb_000920_280 Hb_000920_280 Hb_006623_020 Hb_006623_020 Hb_000920_280--Hb_006623_020 Hb_003091_010 Hb_003091_010 Hb_000920_280--Hb_003091_010 Hb_000211_110 Hb_000211_110 Hb_000920_280--Hb_000211_110 Hb_000923_040 Hb_000923_040 Hb_000920_280--Hb_000923_040 Hb_003142_070 Hb_003142_070 Hb_000920_280--Hb_003142_070 Hb_010968_010 Hb_010968_010 Hb_000920_280--Hb_010968_010 Hb_000808_250 Hb_000808_250 Hb_006623_020--Hb_000808_250 Hb_021422_010 Hb_021422_010 Hb_006623_020--Hb_021422_010 Hb_000617_220 Hb_000617_220 Hb_006623_020--Hb_000617_220 Hb_003018_060 Hb_003018_060 Hb_006623_020--Hb_003018_060 Hb_006623_020--Hb_003091_010 Hb_003091_010--Hb_000617_220 Hb_011848_010 Hb_011848_010 Hb_003091_010--Hb_011848_010 Hb_004701_030 Hb_004701_030 Hb_003091_010--Hb_004701_030 Hb_000359_330 Hb_000359_330 Hb_003091_010--Hb_000359_330 Hb_004450_060 Hb_004450_060 Hb_003091_010--Hb_004450_060 Hb_001754_240 Hb_001754_240 Hb_003091_010--Hb_001754_240 Hb_001894_030 Hb_001894_030 Hb_000211_110--Hb_001894_030 Hb_001357_380 Hb_001357_380 Hb_000211_110--Hb_001357_380 Hb_000640_020 Hb_000640_020 Hb_000211_110--Hb_000640_020 Hb_000211_110--Hb_011848_010 Hb_000059_140 Hb_000059_140 Hb_000211_110--Hb_000059_140 Hb_000104_080 Hb_000104_080 Hb_000923_040--Hb_000104_080 Hb_008887_050 Hb_008887_050 Hb_000923_040--Hb_008887_050 Hb_000345_530 Hb_000345_530 Hb_000923_040--Hb_000345_530 Hb_001584_290 Hb_001584_290 Hb_000923_040--Hb_001584_290 Hb_023001_020 Hb_023001_020 Hb_000923_040--Hb_023001_020 Hb_001040_040 Hb_001040_040 Hb_000923_040--Hb_001040_040 Hb_003142_070--Hb_000359_330 Hb_003142_070--Hb_006623_020 Hb_003142_070--Hb_003091_010 Hb_003142_070--Hb_000808_250 Hb_001352_090 Hb_001352_090 Hb_003142_070--Hb_001352_090 Hb_000676_050 Hb_000676_050 Hb_010968_010--Hb_000676_050 Hb_000205_120 Hb_000205_120 Hb_010968_010--Hb_000205_120 Hb_002292_010 Hb_002292_010 Hb_010968_010--Hb_002292_010 Hb_001504_150 Hb_001504_150 Hb_010968_010--Hb_001504_150 Hb_002784_050 Hb_002784_050 Hb_010968_010--Hb_002784_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
50.9033 20.2603 31.2973 16.3105 65.1676 37.7454
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.8533 24.213 10.9447 8.77162 8.80843

CAGE analysis